Array 1 119862-122141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHOO010000004.1 Prosthecomicrobium pneumaticum strain DSM 16268 Ga0373197_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 119862 32 100.0 35 ................................ GTCTCGGCCCGCACCTTGAAGACGATCTCGTGATA 119929 32 100.0 34 ................................ ATGTCGGCGCCGATGGACCCGCCGTCGACCGTGG 119995 32 100.0 34 ................................ ATCTTGCGCTCGGCCTCGATGAACGCCTCAGCGG 120061 32 100.0 33 ................................ CGGCCTCCCTCAGAGCCGCCATCGTGCAAGCGC 120126 32 100.0 34 ................................ CGCGCGCGCCTCTTGGCAAAGGCGCCCGGGGAAC 120192 32 100.0 34 ................................ GCCGTGACCAAGATCGAGTGGACCGACGAGACGT 120258 32 100.0 36 ................................ TCCTCACGCCGCCCGCGTCGACCGGCTCCGCATGCT 120326 32 100.0 33 ................................ AGAATGAGCATGATCGCATTGGACGGATTTAAA 120391 32 100.0 34 ................................ TGGCAGCTCAAGATCCAGGTCGCATAGACGGTCG 120457 32 100.0 35 ................................ CGACCGGGAAGCATCTCGCAGGCCGAGGTCGAGCC 120524 32 100.0 33 ................................ ATGACCCGCGCAAGGATCCACCCCGCCGAGATC 120589 32 100.0 34 ................................ TGATCGACATCGCCGGCAGCGGAGCCCGAATAGG 120655 32 100.0 33 ................................ ACCGCGGCCTGCGCAGCACGGTATCGCTGTGCG 120720 32 100.0 35 ................................ ATCGTCGAGGCGGTGCCAGTCGCGGCCACGCCCAT 120787 32 100.0 35 ................................ GCCCCCATCTCCGCCCCCTCGCGCTCCATCCGGGG 120854 32 100.0 35 ................................ GCGGCGCTCCGCGGCGAGGGGACCAATCCTCTGAC 120921 32 100.0 35 ................................ GTTCCAGGACTGGGTAAAACAGGGCAAAGCGGGCT 120988 32 100.0 34 ................................ CATGCCGGCGGAGGTGTGCCGAAGGTCTTTGACC 121054 32 100.0 33 ................................ CGCCAAAGTCCTATGAGCCGACGAGCGCCATTC 121119 32 100.0 35 ................................ GATCTCGCCACCGCCGAGCGGCGGGTCGACCGGCT 121186 32 96.9 33 .....................G.......... TGGGCAGTGGTTCAAGCCCTACACAGGGCAGAC 121251 32 100.0 34 ................................ TTACGGGCTTCCGTGACGGCCTGCGACGACAACA 121317 32 100.0 33 ................................ AAGCGGATCGTCGCGGGAACCCGCATGCCGGCC 121382 32 100.0 34 ................................ GCTGAGGGCGAAAAGAAGGGCGCCATGCCGGAGG 121448 32 100.0 34 ................................ TCCGACATGATCCTTCGCGCACCCGAGGGCGGTG 121514 32 100.0 35 ................................ GGCACGGCCGACGAGATCGCGGCCGGGCTCGGCAC 121581 32 100.0 35 ................................ GCGGCGCGCGACCCGTGGAGCCCGGCGCTCGACGG 121648 32 100.0 35 ................................ GCCTCGGCGTGCTGGACCGGGCCGCCGATCCGCTC 121715 32 100.0 34 ................................ GGCTTGATAGAAACAGAGTATGACGCGGACGGCG 121781 32 100.0 34 ................................ ACCGCCACGCTCGCCTCGGCGGTAACCGCGGCGG 121847 32 100.0 35 ................................ ATCACCGTCAATGACGGGCTGTCCGACAACGACAT 121914 32 100.0 34 ................................ TCGTCGATCTCGGCGAGGCGCGCGGTGAGCGGGT 121980 32 100.0 34 ................................ GTGCGCCGATTGAAGGTCCTCGCGAGGCCCTGCG 122046 31 96.9 33 ......-......................... GGCGGCCCGCGGAACTGGTAGAGCGCGGTCAGC 122110 32 96.9 0 ..........................G..... | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.7 34 GTCGCTCCCCCCGCGGGAGCGTGGATCGAAAC # Left flank : ATCGGCGAGGTCGAACACCGCGAGGCCGGCGGCCCTGAGATGCGCCGCCGTGCCCTCGGTCGCGAACAGGGTGACCCCCTTCGCCGACAAGGCCGCCGCGATCTCGTCGAGCCCGCGCTTGTCGGCGACGGAGAGGATCGCGGCGGGAGGTGGCGGCATCGGGAAGCGGAACCATTCGACCAACACTGCAACCTATACGGTATTTTCCGGGCGGAAACAATCATGCTCGCACGAAAGGGCGGCAGGGGCGAAGATGCGTGGGCCGGAGCGGAAAGCCCCCTCGACCCGCCGTCGCGCGATCGGGCGGCGGGCCACGGCGCGGGCGCGAACCCGAAGCGATCACGATGTCTCCGGCGGGTTCGCGCGGCCGCAGAAGCCCGGCCCGCCGCGGCCCGCCCCCGAGCGCGCCGCCGGCAGGCCCCGGCCTGCCGTCCGATCGACGCCGGTTCGCGCCACGCCCCGATATTTTCAAAGCCGGCCAATCGGTTACACTGCGCACC # Right flank : CGTAGAAAAGCGAGATCGGATAAGCGCGGTCCGATCGCTGCTTCCCCCCTGCGACCCGGCGCCTCGGCCGCGGGCGGGAGGTTGCCGGGGCGGCGGGGGAGGGGCTATGGAACGGCGGGCGCGGGGCGCGGGGCCGGGGCCGGCCGTTCCGCGGTGCCGACCGGTCTTCTCCTCCGCAGCCGACCCCGCAAGCGAGCCGACGAGGCCCCGTTGTCGACCGAGCCGGCGCGCCTGCGCCTCGTCCGCACCCTGCTGCCGCGGCTGACGCGGTTTCGCGAGATCGGCCTCCTCCTCGTCGCCGCGGCGACGGGCGTGCTCGCCGGCCTCGTCGTGACGGCGATGGGATGGTTCACCCATGCCGCGCACGTGCGCCTCTATGGCGTTGCCGAGGGCAGCCGGCTGAGCGCCCAATCGGCGCTCGCCACGCCGCTCCTCGCCCTGATCCCCGCAGCGGGCGGCGTGGTGATCGGGCTCTCGGCGCTCGCCGCGCGGCATCTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 147198-151015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHOO010000005.1 Prosthecomicrobium pneumaticum strain DSM 16268 Ga0373197_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================== ================== 147198 32 100.0 34 ................................ AGGTCGCCCGCTACAAAGGAAGCGACCTGCTCAT 147264 32 100.0 35 ................................ GATCGCCTCCAGGTCGCACCCCGACATCAGCCGAA 147331 32 100.0 33 ................................ ATTGCCGACCTGCCACCCAAGTGCTCCCAAAGG 147396 32 100.0 35 ................................ GATCCAAGGATGATCTTCGCCGCGGCGGATGCCGG 147463 32 100.0 34 ................................ GGGGGATTGCTCTCGCGGACGAGAACGCCCCTCG 147529 32 100.0 34 ................................ ATCTCATCAGCCTCTGCACCGGAGGCGGAGGGCT 147595 32 100.0 35 ................................ ACTGACGTGCCGCCCTCCGAACTGCGGAGCGAGGA 147662 32 100.0 33 ................................ CAAGCGCGGCCGCATCCGCCGCGGCGGGTGGTC 147727 32 100.0 34 ................................ TGCGCCATCTCCTGATAGATGCGGATGCCCTGCC 147793 32 100.0 33 ................................ CCGAACCCACGGCCGGCCAGGATCAGCCATATC 147858 32 100.0 33 ................................ ATCGTGGCCAGGAAGACGCCTCGCAGGACCGCG 147923 32 100.0 34 ................................ GATCCACCGCCCGGCGAGAAGAGGGGCGGCCCCT 147989 32 100.0 34 ................................ CATTTCGGCGTGTCGCGTGGCGCGCTGACCGGAG 148055 32 100.0 35 ................................ AGGGTCCGGACCGAACTGGCGCCGGTCGACACGTG 148122 32 100.0 36 ................................ CTCGCCCGGCCGATCGTGTCGCAGACCGAGGCCGAC 148190 32 100.0 33 ................................ TCCCGCGTCCCGCCTCGGGTCAGAGCGATATCG 148255 32 100.0 34 ................................ TCGACTTCCCGCATGCGCAGGCGCGTGACCACCT 148321 32 100.0 35 ................................ ACGGTGAAGAACAAGGACCAGGCCGACGCGGTCGG 148388 32 100.0 35 ................................ TGCGCCGGTGGCGCGCCGCGATCGTCGCCGCTGAT 148455 32 100.0 34 ................................ ACCGGATTTGTCGCCCTTCCCGCGCCGGCGTCAA 148521 32 100.0 34 ................................ CTCGATCCGGGGTGCCGCTGGCTGATCCACTATG 148587 32 100.0 35 ................................ GCGATGCAGGCCGAGGCCGAGGTGATCGCTGCCGG 148654 32 100.0 34 ................................ TATACATCAGGGCAGCATGGCCGAGGCGGGCAAG 148720 32 100.0 35 ................................ TGCCCCTATAAGAGCAACGCGGAATGGCGATGGCT 148787 32 100.0 34 ................................ TTAGGGGGGTGTGGGGGGACCTCTTATTGGGGGA 148853 32 100.0 34 ................................ TCTTGCGAAGGCGATTTGCCATGTCTGTTGCTGC 148919 32 100.0 35 ................................ TGGCAGCTCAAGATCCAGGTCGCATAGACGGTCGA 148986 32 100.0 34 ................................ CGTAAAGGATTCGATCAACCGCGCCCGAGAGAAG 149052 32 100.0 33 ................................ AATTCGCCGGACGAGTTGACGTCGGCCGCATCG 149117 32 100.0 32 ................................ ATCGACAAGCACCAGCGCAACGCGGCCTTCCC 149181 32 100.0 35 ................................ ACCAAGGTGCTGCCGCCGGAGTCGAAGAACGGCTG 149248 32 100.0 34 ................................ ACGGCAGGCATAATAACGCCGCCGATCACAGCGC 149314 32 100.0 34 ................................ GATCGCCGACAAGTACAGCCTGATTGCCGCCGCC 149380 32 100.0 35 ................................ GTGCAGCCAGACACCATACCGACGTAATGCCATTG 149447 32 100.0 35 ................................ TGAGGTCGAAAAGGCGTTTCTGCTGGAAGAACGTG 149514 32 100.0 34 ................................ CTCTACGCGACGCGGGTGCGGCCCTCGGATACGG 149580 32 100.0 35 ................................ GCGGCGTCGGCGAGCACCTTGCGCTGGTCCTCGGG 149647 32 100.0 34 ................................ CATGGCGCGGTATCCGCGGTATCGGCGAGCAGGT 149713 32 100.0 34 ................................ TCGTGAGCACGCTACGTGCACTACGAGTGCACTA 149779 32 100.0 34 ................................ GGTATGACGGCGCTGCCTACGAAAGCTGGAAAGC 149845 32 100.0 34 ................................ CGCGGCGTCGCATTGGGCGTGGACGACATCCGAT 149911 32 100.0 34 ................................ ATGCCGCGCGGGAGCGGGATGGCATTGCGCTCGC 149977 32 100.0 35 ................................ CGTTCCGGGCGTTCGCGGGAGGAAGCGGCCGGCGT 150044 32 100.0 34 ................................ GACGGCCGAGCCTGGCGTGGCCTCGTGGATGGCC 150110 32 100.0 34 ................................ ACACAGCACAATCTCGCGCGCTGCGGCGACAGCG 150176 32 100.0 35 ................................ TTCCCGGATCAGGCCAATCTCCGCATGATGGCGCG 150243 32 100.0 35 ................................ GACATAGACGCGGTGCGGCGGCAGATGCGCGATGG 150310 32 100.0 36 ................................ CGCGGGCGCCCTGTCGTGTGGGCCGCGGACGCGGCC 150378 32 100.0 33 ................................ TCGTCCGCGCCGGGAATCGCGCGGCTGACCGTG 150443 32 100.0 33 ................................ ACGGCGGAAGAGGTCGGTGACTCGCAGGAGGGC 150508 32 100.0 33 ................................ GCGAGCCGGCCCGTGGCGCGGGCCGGCACCTTT 150573 32 100.0 35 ................................ TGGTAGCCGCGCGGGCGCTTGCCCGCCCACGCGGT 150640 32 100.0 34 ................................ ACGGTCGGCGCGACCTCCTGAAGCGTCCCGAACC 150706 32 100.0 34 ................................ AGCTCTGCCACGGGCACCGGGTCGAAATGCTCCT 150772 32 75.0 47 ..............GCT....GC......GGG GCGTGGATCGAAACCAGAAGGCGGCCTGACCATGTCGAACGCTGTTG G [150784] 150852 32 100.0 35 ................................ CCGGCCTGGTCGGCCGCGGCGAATGCCTGCGATTG 150919 32 100.0 33 ................................ AGCCTCGATGCGGTGATCGCCGGGCTATCAGGC 150984 32 87.5 0 ..........G..................GCG | ========== ====== ====== ====== ================================ =============================================== ================== 58 32 99.4 34 GTCGCCCCTCACACAGGGGCGTGGATCGAAAC # Left flank : GGAAATGACGCATGCTGATGCTCGTCGCCTATGACGTCCGCACCGAGACCGCCGCCGGCCGCCGGCGTCTGCGCCGCGTCGCGCGCGCCTGCCTCGATTACGGCCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAGGTCGATCCGGCGCAATGGGCGGCGCTGCGCGCCCGGCTGATCGCCGAGATCGACGCGGCGGCCGACAGTCTGCGCTTCTACCGGCTCGGCGCGGAGGGCAGGCGCCGCGTCGAGCACATCGGCGCCGAGCCGACGCTCGATCTCGACGGCCCGCTCGTCTTCTGAACGTGCGAACCGCAAGGGGCGGCGCGAACCACGAGCGCACACGATCCGCCCGAGCGGTTCGCGCGGCCTCCAACCCCTTGCCGCGCCTCGCCCTCTCTCGCCGTCGGGCGCCGCCCGCCCCGCCCGCGGGCGCCGGCCGGCCGGGTTCGCGCATCCCGTGCGATTTCTCTTTCCCGGGCAGCATGTTACGAAGAAGGG # Right flank : GGGGGATGAAGTCCCGATCGCCGTCGAGCCGTCCCCCGGCCCGGTCGACACGGCGGAAACGGGTGGCGGCGGCGGGTGGATTCGGTAGGGTTTGGGCGGGAAAAGGGGGAGAAGACGATGCCGCTGCAGAACCGGGTGACGCCCGATGGCGTTCTCATCGCCGATCCCGCCCGCGGCCTCCTGATGGGCAATCGCGGCATCCTGCACGACGACACGCGGCGGCTCGGCGCCGCGCTCTGGCGTCACACGAACTGGGTCGCCTGCCGGCTCGCCTTCAAGGACCGGCGGCGCCCGGTGATGGCGCCGGGCCGCTACACCGAACTGTTCTTCCTCGACGAGGCGGTGGCCTTCGCCGCCGGCCACCGGCCCTGCGCCGAATGCCGGCGCGACGACTATCGCCGCTTCACCGCGGCCTTCCGCGAAGGCACGGGGCTGCGACCGGACAATGCCGCCGCGCTCGACCGCGTGCTGCACGCCGCCCGCGTCGTGCCGCGGCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACACAGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //