Array 1 2268757-2273946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080633.1 Shewanella putrefaciens strain YZ08 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2268757 29 100.0 31 ............................. CTAGACCAATTATTTTCATTAATACCAGCAC 2268817 29 100.0 31 ............................. TTTAAAGCAGGAGCAAGATTACCGTTTACGG 2268877 29 96.6 31 ............................T GAAGTACATATGGCGACCATTGATATGGTAT 2268937 29 96.6 31 ............................C GAAGAATGCGAGTGTTGTGCGGTGTGGTCTT 2268997 29 100.0 31 ............................. TGGCGCAATGACGGCGCAGCGTGCTAAGTGC 2269057 29 100.0 31 ............................. TTGAGGGCGCGCAGCCCAGTTCGAGCAACAT 2269117 29 96.6 31 ............................T TGATACTAAAAACGGGTCTCTAGTGCTAATA 2269177 29 100.0 31 ............................. GTCTGTTAATTTCTGCAAGTGTGCTATCCAC 2269237 29 96.6 31 ............................G CCATTATTGAAGCGGAGAGGTTTGTCAAAGT 2269297 29 96.6 31 ............................T TAGCTGGTATCTTGCAGCCACCATTTAGCGC 2269357 29 96.6 31 ............................G AGAAGGGAGACTAAATCACCCATCTGAAAAT 2269417 29 93.1 31 ....................A.......T GCAGGGAATAACCAATTTAAGCCGATACCGA 2269477 29 100.0 31 ............................. ACGCCTGCGAGGACGAGCTCGTGCCAGAATT 2269537 29 100.0 31 ............................. ATCGTGGCATTGTCATCTAATTCATCACGGA 2269597 29 93.1 31 ................A...........C CATTGCCGCATCGACTTGTTTGCCATTTCGC 2269657 29 100.0 31 ............................. GAACCGATAATCAATTCACTGTCTGGTGTAT 2269717 29 96.6 31 ............................T GATATCGTCCAGCAGTTAAAGCTTCGAATTT 2269777 29 96.6 31 ............................G ACCATAGCAGTTGCGGCAGTGGGGTTTCACT 2269837 29 96.6 31 ............................T CCGAAACTACAGCCAAACAAAGCCCCTACCG 2269897 29 100.0 31 ............................. TTATCACATTTGTAAGTAATAGAACCGTTAT 2269957 29 96.6 31 ............................C TTTAAATGATTCGAGATATTTAGCTGAAAAC 2270017 29 100.0 31 ............................. CCAAAAGCCGTAATAATCGCACTTGAATCAG 2270077 29 96.6 31 ............................T TGCCAATCTCCAACTCATTACCGTGCGAATC 2270137 29 96.6 31 ............................T TTAGCGGCCTTGGCGGCTGCTTCTTGGGCCT 2270197 29 96.6 31 ............................T GACTGTTGGTCACGACCTGTGGGTGTTGGTA 2270257 29 100.0 31 ............................. AACACATAAACGATGCGACATGGCGACTTAT 2270317 29 96.6 31 ............................C ATACAACAAGGCCAATCTTTCCTGTGCCCAT 2270377 29 100.0 31 ............................. TATTTAATTTGTTTCCATTAGTTCGCGTTCT 2270437 29 100.0 31 ............................. GTTACCGTATTTGAGCACCTTGCTTTAAATT 2270497 29 100.0 31 ............................. ATGTGAAGAATGGGATCTTGAATGCTTCTGA 2270557 29 96.6 31 ............................C AACCGTTCGGTGCCATGTGAACATCCCACCA 2270617 29 96.6 31 ............................T GTTGTTGTTAGTATATCAGCCGTGATGCTAT 2270677 29 96.6 31 ............................C AGTGACCGGGATAACCTTCACGACTGCAAGG 2270737 29 100.0 31 ............................. ATATCTTAAACACCACGCCGATCAATAATGA 2270797 29 100.0 31 ............................. CTGTTTGCAGAGATTTGGCTATTGAAGGCCC 2270857 29 96.6 31 ............................T TGCCAGCGATAACGCTAAGAATAATCTTGTG 2270917 29 100.0 31 ............................. TTCTAAACTCCAAATTAATAATGTAATCTGC 2270977 29 100.0 31 ............................. AGTATTTAAACGGCACTTGAGCAATGTAAAA 2271037 29 100.0 31 ............................. TTTACAACATTAAGCGCATGATTCAATGTTG 2271097 29 96.6 31 ............................T AGCGCTAGCTGGTATTTAATAATTTGAATGT 2271157 29 96.6 31 ............................T TGCAGCCACCATTTAGCGCTGCTGCTGATAG 2271217 29 89.7 31 .......A.......T............T TTGTTTTCTAGATCCATAGCGCAAATGTTAC 2271277 29 93.1 31 .........T.......T........... CTGAAGTGTCAGCTGGCACAGAGACAGATGA 2271337 29 96.6 31 ............................T AACCCTGATGGCCCCAATAAGGTCATGTGTG 2271397 29 96.6 31 ............................G TACCGAGGTTGTACGAGAAGTCAGCCCACGC 2271457 29 100.0 31 ............................. TGTACGGTACATCGTGGAAGTCTGGCATGTT 2271517 29 96.6 31 ............................C GTGGCGATGGTTACGCCTGAGTTTGAATTTT 2271577 29 93.1 31 .........T..................T TAATCTCCATAGCTAACTGAGGCATAAGATC 2271637 29 96.6 31 ............................T GTTTAATAAAACGAGCAAAGTCGAATAACCC 2271697 29 96.6 31 ........T.................... CCAAGTCGATACAGGATTTTATTTACTGATA 2271757 29 96.6 31 ............................G CGTGCCATAGGTTATCCAAATATGCTTTTAA 2271817 29 100.0 31 ............................. GAAAGATTACTTCTGCTGCTATTTGTTCTCT 2271877 29 100.0 31 ............................. TGAGCGCATAGAAGCAGGGCTGAATTGCTGA 2271937 29 96.6 31 ............................C GGATAATTCTTCCCACATTCACAAAGTGATA 2271997 29 96.6 31 ............................G ACCACCTTACGCTTTACCAGTGACTTTTTAG 2272057 29 96.6 31 ............................G AACATGCGAGGTACTTGGTCCAATGCTGACA 2272117 29 96.6 31 ............................T ATACAATTACAAGCCCTTTTGTAAAATAAAT 2272177 29 93.1 31 ....................T.......T TCTATAAACACCTCATAACTCTTTGGTGGTC 2272237 29 96.6 31 ............................T TGTGGGAATGCGTTTTCGAAACACTGTGAAG 2272297 29 96.6 31 .........T................... GAAAGTAAAACATAAGATAAAAACCTAATCG 2272357 29 93.1 31 .........T..................C CAATGAAGGGGCTAAGGACGTGCTGCGGAAG 2272417 29 100.0 31 ............................. GAAGCAAATTACAGTTCCGAGTGATTATCTA 2272477 29 93.1 31 ...............A.T........... AACTGTGGAATAGTTTAAACACAGCATATAG 2272537 29 82.8 31 ...T.T....T.............A...G AACTCAACCGGATCGGCATTCATCTGCTTAA 2272597 29 100.0 31 ............................. ATTTGGACCAGCTTAAGAGCGTTAGACATTT 2272657 29 100.0 31 ............................. ATGTGAAGAATGGGATCTTGAATGCTTCTGA 2272717 29 96.6 31 ............................T TGGTTTAGCTGCGTGCCAGAATAGAAATCAA 2272777 29 93.1 31 ...............T............C TTAAGCTCTGCAAGTGTAGCGCTGGTTTTTT 2272837 29 100.0 31 ............................. GTTAGCATTTATTAATCTGATCATTTGAAAT 2272897 29 93.1 31 .......A.........T........... TAAAGTATGCTGGCTCATAGAAGTAGTATTG 2272957 29 93.1 31 ..G......T................... TCGCGAACCCTAAAAGCGTTGGGGTGTTATT 2273017 29 100.0 31 ............................. TATCGAATGACGCTTGTACGTACACATCGGA 2273077 29 96.6 31 ............................G CCAGTGTTAAAAGTATATAAACCATTAACTT 2273137 29 96.6 31 ............................T CAATTGCAGAATGGATCTCAGCAGTGTCAGG 2273197 29 100.0 31 ............................. ATAAACGACCCGCTTGCAACTCCAGCGCTTC 2273257 29 100.0 31 ............................. TCCACATAAAAACATCTTGCGCGATAGTTAA 2273317 29 100.0 31 ............................. TCAACTTGCACAGCGTAGCTAGAACGCCCTA 2273377 29 96.6 31 ............................T TAGCAGCAGTGTTGAGTGTCTGGAATTGTAC 2273437 29 93.1 31 ............G...............T CATTTCAGATACTCCGTGAGTTTGGGTTTGA 2273497 29 93.1 31 ...............G............C CACACTTTCCCGTTGTCAGACAGACTCAACA 2273557 29 100.0 31 ............................. ACAGGACCCACCAGTAACATTCGCGACTAAC 2273617 29 100.0 31 ............................. GTATTCTAGTTCGCTTGAGGGCCAAGACATA 2273677 29 96.6 31 ............................C CCCACGGGTTAGCAGCAGTCCCATTGTTACC 2273737 29 96.6 32 ............................T GCATTGGAACGCTATAACCATCGGCTTGAAGT 2273798 29 100.0 31 ............................. TCAAGTTATATTCAGTCGGTGAAACCAGTAT 2273858 29 93.1 31 ..............G.............G CTTTAGTCGGGGTGATAGGCTTGGCAATAAG 2273918 29 93.1 0 .................A..T........ | ========== ====== ====== ====== ============================= ================================ ================== 87 29 97.1 31 GTTCACCGCCGAATACGCGGCTTAGAAAA # Left flank : TACATCGTACTAGCTTGCCTATTCCCCATGCTGGGGGCGTTCATCCACCCAGAGAACTTATCGGGATTATTGGTGGATTATTAACGCTTGAAAATGAGTTTAAAATATCAGATACGCTAATGGGCCATCTTGAGAATGACCAAGCGGATAAGGGGATGCTCAACATTGGCTGTGCCGCCGATGACTGCTTTTTTTATTACGATAATGACCATCAGCGGATGCAAGTCATGCAGCATAAAAAAGCGACTACGGCATTTTTGTTTGAGTTGTTATCGCAGCTACAAAAATGCGGCACTGTGCCCATGATCGATATCCATGCTTATGGTAAATGGCTCGAATAGCGATGAAGTGTGTAGTACCGTAAAAATACCTTCTTTTTTCGCCCCACCGTCAAACGCTGATAAACCGCGGCTTAGCGCTTAGGTATAAAAATAAAGGTATTTATGCTAAAAATCTTAATTGTTCTTTAATAATCAAATCCTTAATGGTGTTTTGCCATA # Right flank : ATGTGAGGCTAATTGCTTATTGGGATAAGGGGATGGATAGGGCTGATACCAAGCATTAAGGTGCATGCTTCCGTTTGTAAGCAGCTTAATAGCTGCAGATGCATTAGTCGTTCAGGTATTTGCTAATTCTTTGGGTGAAGCCGGTAATGTTAGGGCAGATATAGGCGTGTTGTACGACGATAGCGAGTGAGGATACCGTACGTGTTATTAGCATTAGTTGTTGCTTGTGTGTTACGTATCGATAGGTGAATTACATCATTCTGGTTCAACAGTTCTTCGGTGCGGCCTAGATAATCCCTAGATCCCCTCAAAAAGTTGGGAGAACTCAAACCCATGTGGCAGCTGGGCTACAGGCGAGTCATTGCATCAACCCTACAGGAGGATGCAACGACGCGCCTTTGTTGCTTTTGTGTTAACGCTTGAGGGCGTAAAGGGTAGGGCAAAAGGCGAGGTTTTTGGCTGTTTTGGGTGAATTGATGGCGCCTAAATGGATCCTTCTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATACGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //