Array 1 2018388-2019930 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVE01000001.1 Capnocytophaga granulosa strain NCTC12948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= =============================== ================== 2018388 45 88.9 30 ..........AT...T.......C.........G........... TTTTGCACTGTCAAAATTAAACAAGAATAT 2018463 45 100.0 30 ............................................. AAGGTTACTTTTCAAGATGAGTTTGGAAAT 2018538 45 97.8 30 .....................................T....... CTATCTGAGATGAAGGATAAGTACTTAGCC 2018613 45 100.0 30 ............................................. AGATAGGGAGGAGGATATAAAAAAAGTTAT 2018688 45 100.0 30 ............................................. GAGATGAAAACAGCCATCATTACCAATCCT 2018763 45 100.0 29 ............................................. TTCATCGGAAAGAGGGTACAGCGGAGCGC 2018837 45 100.0 30 ............................................. CAACGTAAATATGAACTAAGAGCCTTTGCC 2018912 45 100.0 30 ............................................. CGATAGTCAAGGACATGAACGGGCAGATAA 2018987 45 100.0 30 ............................................. CAAGTTTCTGAGTAAATCGACGACCTGAGC 2019062 45 97.8 30 .....................T....................... CCAAGAAGCAAACAACACAACGTGGCGGCC 2019137 45 100.0 30 ............................................. CATGCTGATTTATCATTGACCAAGAACAAC 2019212 45 100.0 31 ............................................. AGTGGATGGGGAGCGCCTGATCCTACACAGC 2019288 45 100.0 29 ............................................. TTTTCCTCATCCGAACCTTCCCAAACTGC 2019362 45 97.8 30 .....................T....................... GGAAAAGGAACTGAAGGAGAAAGAGGAGGG 2019437 45 97.8 30 .....................T....................... TGTATAAAAAACTCGCTTTCGAGAATCACC 2019512 45 97.8 30 .....................T....................... TCCACAGCCTGCCCTTTGTCGTTGAGTAGG 2019587 45 97.8 30 .....................T....................... CCAATTATGGCACTAACATCAATACATTTT 2019662 45 95.6 30 .....................T.....................C. CCCCCCACTTTCGGTGGCTATCTTGACAAT 2019737 45 97.8 30 .....................T....................... GCCCGCTTGGTTGGCTTCGTTCTTAGCAAA 2019812 45 97.8 29 .....................T....................... TGATATAGATATTTATGTAGCACAAAACA 2019886 45 97.8 0 .....................T....................... | ========== ====== ====== ====== ============================================= =============================== ================== 21 45 98.3 30 GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Left flank : CCGCTGGCAAATCACATGATGTGAGAGTTGGTGTTGCGTAAGCAGGCGCAGCTTGTTTTTCACTCTTCACTTTTTGTTTTTCATCTCTTTGCAGCCATCCTTCTAAACGCATAATAAGGCGAATAGCTGCGATGCTTTGGCTAATGGTGGCCACTATAGTCTTCCCATTGCTCTCTATCGGCTCACGACGAGCGTATGTCCAAAGTATATCTAAAGCCTCTTCCATAATGATTAATGATTAATGCCACTAATGGTTAATGGCTGACCACTGACTACTGAAAAACGAGGCAAAGTTACAACAATTCAGGTGTCGAAGTCAAGGGGAAGGCTTATGAGAAGTAAGAATTTATACAATAAAAAAATATGTTAAGTACTTAACAGAAGTTAGTGGTCAGAGGTCAGTCTATAGTGACTAACCTCTTATTCGTTATGCTGTTACATCTAAATATGTTAATTGTATATTAAAATCAACTTGTAAAACATGAATTAGTATAAGTATT # Right flank : CCTCAATCTTTTTAAAGAGATTGATTGTCTGTAGGTTATTCAAAAGTTCAAAAAGAGAAAACCTTCTTTTCTATTCTATCTTAGGAATAAAAAGGAAGGTTTTTCGTTTTCTAAAATTTAAAAAAGAGTGAGCTGAATACAATCTTTAGGAGGATCTTTCTTTGATTGACAATAGAAGATCTCTATTCCTTCAAATTGCTTGTCGGTGATAGTAAATATGGCTACTTTTCCAAACTCAGGGAGCCATTGCTTGACACGGTTGATATGTACCTCGGCATTCTCCTTGCCAAGGGTAAGTGCCATTCATCACAGCTGATAAGGATCACATTGTTTTTCATCAGTTCCTGTATCAGCTGGTGAGAGAGGGTGATTTGGTAATGGTCAAGCATCAGTAGTCCTATATCTTCTATAGGGACACTGCCTTTTTCTTCTTTGGTTTCTGGGTCGGTAACCTTTAATTGTTTGTCTTTCAGCTTCAAATAAGCAGGGTTACCTATATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC # Alternate repeat : GTTGTGAGTTGCTTTCAAATTTGTAACTTTGTGACCTCAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.22%AT] # Reference repeat match prediction: F [matched GTTGTGAGTTGCTTTCAAATTCGTAACTTTGTGACCTCAAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //