Array 1 214806-213640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKWY010000002.1 Clostridium gasigenes strain CM001 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 214805 28 96.4 36 ...C........................ ACTATTGCATTATTCGACATCAACTTTTTTAATAAA 214741 28 96.4 37 ...C........................ TTACGAAAAAGAAAGAACCTCCATAAACTTGTATTAA 214676 28 100.0 36 ............................ AAGTTTAGCAATTTCTATATCAAGCTTACTATTATA 214612 28 100.0 37 ............................ ATGCATAGTAGCCACGTTTGGGAAATAGCTATAATTT 214547 28 100.0 35 ............................ TTAGGATAATTTACTAATCTTGATAATGAATTAAC 214484 28 100.0 36 ............................ AGAAGTAAATATTACATATAGTTTAGTCATTACTGC 214420 28 100.0 37 ............................ CCAAAAGAATTAATGATGGCTGTAGAAAGAGCTGTAG 214355 28 100.0 37 ............................ ATATAATGAGAAGTGCATATAAATCTTCAGATGGAAC 214290 28 96.4 18 ............T............... CATAGAGAGCGTACCCAT Deletion [214245] 214244 28 100.0 37 ............................ TAGTTTTTTCATAAAACCATTTTTTATCTCTAAATCT 214179 28 100.0 37 ............................ AAAGTAAAGAAAATATTTAATTAAAATAAATAAAAAG 214114 28 100.0 38 ............................ GTTTTTATCCCTTTTAGTTTACAGTCTATTCCTTCCAA 214048 28 100.0 37 ............................ TGATTATTAGAGGCTATACCTAAAATAATAGTTGCTC 213983 28 100.0 36 ............................ AAAGATGTCATCTCTTCTTTATTTTGATTTACCTTA 213919 28 96.4 36 ...............T............ TTAACAGATTCTGGCCTTAACAATTCTCTTGCTAAG 213855 28 96.4 36 ....................G....... AAATTACCTACTGTCACTATTGAACCTTATAAAAAC 213791 28 100.0 36 ............................ TATGTAGATAGATTAGAACAATATCAAAAACAAATA 213727 28 100.0 32 ............................ GAAGTACAGGATTATATAGATTTAGTTAGAGG 213667 28 89.3 0 .GGG........................ | ========== ====== ====== ====== ============================ ====================================== ================== 19 28 98.5 35 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TATTAAACATTTGATAAATGATGAGAAATATAAACCTTTAAAGGCGTGGTGGTGAAATGTTTGTTATAATAACTTATGATGTTAATGAAAAAAGAGTTAATAAAGTTAGAAAGACGCTTAAGAAGTATATTACATGGACACAAAATTCAGTATTTGAAGGAGAGATAACAGTTGGAAAGCTAACTAAGTGTATAGCTGAGGTTAAGAAATATTTGATTTCAAATGAAGATTCACTTTACATTTATAGAGTTTCATATAGCAGAAATATTAAGAAAGATGTAATTGGAGTAGAAAAAAGTCACGATGAGCTATTTCTATAGGTGCAGTAAGCGATTTTTTTGCCAAAAGACATGCAATAGTTGAAAACAGATGGCTAAAGCTATATTTTATAGGAGTAAAAAAACATTACTGATACTTCACTGCAAAAAAGTATGATATAATGAAATTAAAGAGTGCTGGAAGCTAGTAGAATCAATAGATTTATGAATGGAAAAAATGGG # Right flank : ATAGTAAATATGGAAGGGTATTACTAACAGATATAACGTATTTATTTTATGGAAAAGGTCAAAGAGCATACTTATCTACAATTAAAGATGCCAGTATAAATGAAATCGTATCATTTAATATATTAGTTAGCTTAAAACTAGATATAGTAACATATACAATAGATAACCTGAGAATAGATTTATTAACTCTAATCAAGGTATACATTATACTGGTACTAGGTTTCAAGCAGTTTGAAAGAAGCTAAATTGAGATAATTTATGTCTAGCCGAGGTAATTGTTGGCAGGGTGATACACAACAAGCGATCTTCTGGTTACATTTCTTTCATTTGGCTACTTTTTTTGTGTAGATTATGATAGGTGCAGTTCATAGTACAGAAATTATATTCTCAATGAGATTAGTTTTTTAAAATGTCCTTGGCAAAGGGTATTTTTTATAGATAAAAACTTTATCGCAATTTTTTATTGAAAATAATTTTTATATTTGTGAAACTAAAGAAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 453861-451381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKWY010000002.1 Clostridium gasigenes strain CM001 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 453860 36 100.0 30 .................................... CGTATATATTGGAATTGGAGTTAATTCACC 453794 36 100.0 30 .................................... GTAAAATTTATGTTGGTGTTATACCTAATT 453728 36 100.0 30 .................................... TAGATTCGCTAGCAGTGAGCACATATCTTT 453662 36 100.0 30 .................................... GTCTAATTTTGCACTTGCAACACCTGTATC 453596 36 100.0 30 .................................... AATTTGGAATTCAGTTAGTTGTTCTTCAAC 453530 36 100.0 30 .................................... GCAAAAAAAGACATTAAATGCAAGCTACAA 453464 36 100.0 30 .................................... TGTTATTTTTGTTGGAGGCAAATGGTTATG 453398 36 100.0 30 .................................... AGGAGCAATGAAAGGTGGATTCGGAAACTC 453332 36 100.0 30 .................................... GAAATCCAATTCAGAACCAGGAGAATACAA 453266 36 100.0 30 .................................... TAATGTCTTCTTATTAATACTATTCTTATG 453200 36 100.0 30 .................................... TATAACTAATATCTTTGGAGGAAATGCAAC 453134 36 100.0 30 .................................... TACTTTTAAATTGTATTCTGCCTTTTTTAC 453068 36 100.0 30 .................................... AAAAGTTGCGAATGAATATGCAAGTTCGGT 453002 36 100.0 30 .................................... TATATCAATTTAGAAAGAGAGGATATATTA 452936 36 100.0 30 .................................... TATTAATAAAAAAATATCTGTAAAGACTGC 452870 36 100.0 30 .................................... TAATAAACTAACACTTAGTAGAAGTTATAT 452804 36 100.0 30 .................................... CATTAGCAACCTATTTACTTCTTTTAACAA 452738 36 100.0 30 .................................... TTCTCTTAGAACAACAACAACATCTTTTGC 452672 36 100.0 30 .................................... TTTAGGTTTAACTTCTTCCTGTTTTTTCTC 452606 36 100.0 30 .................................... ATAATGCGAAAGGTATTGATGAAGTAAGAA 452540 36 100.0 31 .................................... CTAAAATTCTTAATTTAGATAATCCCTTTAA 452473 36 100.0 30 .................................... TTGAAAATAATAAGTTCCAACAGAATCTAA 452407 36 100.0 30 .................................... AACCTTTGTTTGTGCAAGATGAAACAAAGA 452341 36 100.0 30 .................................... ATGAGATTAAAGAGTTGAACGAAAATCCTA 452275 36 100.0 30 .................................... GAAAAAAGAGAATAACAAAAGAAAATCCTA 452209 36 100.0 31 .................................... CCTAATGGATTAGCATATTGCTTTAGAGTAT 452142 36 100.0 30 .................................... GCAGATTGACATTAGAAATACCATCTTTAG 452076 36 100.0 30 .................................... TATACAAAAGGATTTATACCAATTAATATA 452010 36 100.0 30 .................................... TACCTAAACCATCTGACCCATTACCTAATG 451944 36 100.0 30 .................................... ATTGGTATTAAGAATCAACAAACATTAATT 451878 36 100.0 30 .................................... AAAATGTATTGAGATCCAAGGTAGAATAGG 451812 36 100.0 30 .................................... AACATTAGTTTCTGTAGATTTAATAAGTTT 451746 36 100.0 30 .................................... GTTCACACTTGTTTGTATAAGTATCGAGAG 451680 36 100.0 30 .................................... AAAAGAAACAAAAGAAACAAAGAATACTGT 451614 36 100.0 30 .................................... GATTATTCTTATAGCAGGAAAAGCAGAGCA 451548 36 100.0 30 .................................... AGATATGTGTCAATTAAGAATAAACCAAAG 451482 36 100.0 30 .................................... TTACTTTGCCCATTATAAACTGGTTCTGCA 451416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GTTTTAGAGTTATGTTATTTTAGATGGTATTAAAAC # Left flank : GTATAGGCAGGAATATAGTGAAGTGAATTTGCTTGAAAAATTCAGTGATGTTATACAAAATATAAATGATATTGTTGCTAGCTATGATTTCGAGTTTGAATACAAGAGAGAGATAACAATTAAAGAGCTACTTAAAACAATTAATTTTAAATTTGATAGTAATTACTATGATAATCCATTTGATAATATTATGTGTATATTTGACTTGGTATCTACTTTTAAATTATATAAACTAATTGTAGTAGTAAATGCAAAATGTTATTTCAAAGAAGAAGAATTAGTTGAGATATACAAGGCAGCAAAATATAGAAATATAAATCTTTTAATAATTGAACCTATTGTAGATATTAACTTAAAATATTTAGAAAATAAGTTAAGTATTGATAATGATTATGATGAATTTATATTGAAAATGTAATATAATAGAAGTATATTAAATATCTCTAAAATAACAAATGATTTTGTTATGTATTATTTATACTTTAAAATGCTGATTTGAG # Right flank : ATGGGTAATTTGACCCTAGGTGGTAAGAGCGTTGAACATGTTATCCTCAAATTAGATCAAAGCAGGGGAGAGATATCTATAGAACCTTTGTCTAAAGATGATATAGATATCTATTTTCTATTTTTGAAAAATAATAGCATTAAAGAATTAAAACTAAAGAGATAAGAAAATTCTGGAAGAAACAGCTAATGTGGCCATTAAATCAAATAGACAATAAGAAATATATAACTTACCTTATAAATAAAGATCAGCAATCATATTTGCAATAATAGCAAGTTATTTCAAATAGGTAGTGGAGGAAATCACATAGTCTTTAAATACTTTTGAAATTGGAGACATATAAGAATCCTTAAGGTAACCCATATAAATAACTCTATCTTTAATATTTTCTTTAATTTTTATAATGGATAGAGTATTTGTATTAATAACTGGTGTGTTTGGAACTAGTGAAATACCAGCACCAGCAGCTACTAATCCTTCAAGCATGCTAGATTCGCTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTTATTTTAGATGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //