Array 1 4043-714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSGV010000109.1 Acinetobacter baumannii strain KPC-SM-17a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 4042 29 96.6 31 ............................A TTACCACGGCGAGCGGCTTTTTGCTCAATCT 3982 29 96.6 31 ............................A TAAGGTGATTAATTTTCCTGTGTTTTGGTCT 3922 29 100.0 31 ............................. TACCATCCGCGACATTTTGGCTGGTGGCAGC 3862 29 96.6 31 ............................A AAGATTAATAAACTGTGAACCCGACACAGTC 3802 29 100.0 31 ............................. AAAACTCTAATTATGGCGAATCTGCCGTAAT 3742 29 100.0 31 ............................. AAGTTGTAAGCTGCTCTTAACTGCATGATCT 3682 29 96.6 31 ............................A CCACATTCAAGTGTTAGATAACTTTAAAATG 3622 29 96.6 31 ............................A TGATGGCGAATGGTGGGACAGTGACTGCCAT 3562 29 100.0 31 ............................. TTTATACGTTCAATTGCACCCCAATCTTCAG 3502 29 96.6 31 ............................A TTTCATTCCATCCAGTTGACGCAATTTGCTG 3442 29 96.6 31 ............................A AAACCCATGATGACGAGCTACTCGCATTAAT 3382 29 96.6 31 ............................A CTTTTAGAGCCGTGCTCAATCAAAGGCCTAA 3322 29 100.0 31 ............................. TGCTTGATCGGCACAATCATGTAGTGATGAG 3262 29 100.0 31 ............................. GCGGATGAATGCAACCAAATAGCCTCTTTAA 3202 29 96.6 31 ............................G TAAGTTAGATCGAAATAAACCGTCTCACCTT 3142 29 100.0 31 ............................. TAATTTTTGCAGCTACAGCAACACCTGAGGC 3082 29 96.6 31 ............................A TAACAGCTTTACTTGTTATTTGATTAATTTT 3022 29 96.6 31 ............................G TTGACCTCATCAAACTCGACAACATCAGGTT 2962 29 96.6 31 ............................A ATATAAACTTCAAAATCAGTCCCAGCTTTTG 2902 29 96.6 31 ............................G GGACGCTGGCAAGCGTTCATAATCCGGTCAT 2842 29 100.0 31 ............................. TTAGTTGGCGTTATCGCTCTTGATGGCTTTA 2782 29 100.0 31 ............................. ACCACGTTCAACGATAGCAACGTGATTACCA 2722 29 96.6 31 ............................A TCACAGAAAATAGGAAAATTTATAGAAATAT 2662 29 100.0 31 ............................. ACAAGACCGATTGGAGTGATTAAATCGCTTA 2602 29 96.6 31 ............................C ATAAGGACGATGCAAGTGATAGTGTTCGCCG 2542 29 96.6 31 ............................A CTACGCAACCAAGACCCAACAACGGGTGATG 2482 29 96.6 31 ............................C ATCGCCAAACTTTGAAGACAAAGTATTAAAA 2422 29 96.6 31 ............................G AGCAGTTATAAGCACATGATCTAACCGCTTC 2362 29 96.6 31 ............................C AAAGCGTTTATATGAGATTTATGAGTCTGCA 2302 29 96.6 31 ............................G ATCAAAGGGGTGTACGAAGTGGTGATGGGCC 2242 29 96.6 31 ............................A GATTCAGAAACACTTGCCCTTCCACCGCCAG 2182 29 100.0 31 ............................. TAGCCGTGCTGATCGTATTCGCTTCTTGGGT 2122 29 96.6 31 ............................A ACACGACAAACAAGCATATCGCCATATTTTG 2062 29 100.0 31 ............................. CATAACCGTTCATTTCTAACGCGCAGTAAAA 2002 29 100.0 31 ............................. AACGCTTTGTACCATACCGTAATTCCCAAAT 1942 29 100.0 31 ............................. ATTAGGTACGATTGAATGCTTGTTTTACGAA 1882 29 96.6 31 ............................G CCACGTTCATTGGTAGTAATTGATGAAGCGC 1822 29 96.6 31 ............................A CGCCTGGCTCGGGGAAAACTTTGTGGGCTGT 1762 29 100.0 31 ............................. TTCAGCAAGAACTACAAATGTTATTGCCAAT 1702 29 96.6 31 ............................A AAGAAAGTTCGATTTTCAGAACCCGGTAATT 1642 29 100.0 31 ............................. TATTGCCCGTGGTATAGCGCGTAATGCACGT 1582 29 96.6 31 ............................A TGACTAATGCACTTGCCAAATTGATATAGAA 1522 29 100.0 31 ............................. AGATCCTTCACGAATGTACCGCTGTTAGGGA 1462 29 100.0 31 ............................. CAAACGTATCAATTTCCGAAATTACCCGTTG 1402 29 100.0 31 ............................. GCATTGCATTGGTAAGCTCAATATATTGCCC 1342 29 100.0 31 ............................. TGCTGCATGTATGTCTGCATAGCTTGACTGT 1282 29 96.6 31 ............................A AAAGCGGAAACCGTCACGCTGAATTAAAGTG 1222 29 96.6 31 ............................A GAAAGACGGGCAGGTGTCTTATGTCAAGTCA 1162 29 96.6 31 ............................A GAAGCAAAACCTGCCGCAGACTGACCAAATA 1102 29 96.6 31 ............................A TTGAGGGTTAATATCTGATTTACCTTTTAAA 1042 29 100.0 31 ............................. CAATATTTTAACAGTTTTGTTGGCCCACTGT 982 29 96.6 31 ............................A AATGGTGCCGGATGGTCTAGGGGGGCAGGAA 922 29 96.6 31 ............................A TGTAAATGCGGATCAAAAGACATACACATCG 862 29 100.0 31 ............................. TAAGCGCAATCGATCTATGCCAATATTTATT 802 29 100.0 31 ............................. AAAGCTCTATACCGTGGCGACACTAAATCAT 742 29 93.1 0 ............TC............... | ========== ====== ====== ====== ============================= =============================== ================== 56 29 97.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : AACGGCGCCTTCAAGGCCCTGTGG # Right flank : GGCTCTCGTGTTCATTTTGGCGAACATCGACGTTCTTCATCGCCCAGATAGTCATTACTACACCAAACAATAACTTCATTATTTGTATTTAAACATCTAGCAAGTGGATATTGCTTACATATTCTATCTATAGTCGTAAAATCTCTATACTGAGAATTATCCTTTAATTCTTGTACCTTTTTTTCGGCCAACAATGTATACACGATTGCACTCCATTATGCTTTTTTTAAAGTTAATTGAATGAAAAGTCCAATTAATGCAACTAATCCAGCAAGGATAGGTAATAACCATGGGCTAAGATTAAAGTAATAAATTAACCCACCTAATCCAGAACCAATTGCACCACCTAAATATAATGCAGACTCATTTAAAGCTACTGCTAAATTACCACCTTCTTTATTTTCTCTTGCGTTAATTAACTGATCGTTTTGAGGTACTTGTAATGCCCAACCTACAGCTCCCCATATTGCGATAGGGATCAAAACTAGCCAAGAATTGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91235-87903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSGV010000020.1 Acinetobacter baumannii strain KPC-SM-17a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 91234 30 93.3 30 ............................AT GACCACGCGCAAACGCAATAATTGTCGGTA 91174 30 93.3 30 ............................GC CTCATTCACAAAGCTTAAATCTCTAATCAT 91114 30 96.7 30 .............................G ATAGGAGAAAGCACAGCATTAAAGCTAATT 91054 30 96.7 30 ............................A. CCCCAATATCTTCTCAATCGAATATCCAGC 90994 30 96.7 30 .............................C AAAAGTGTTCAATCCAAAATTGTATGCTCA 90934 30 93.3 30 ............................GT ACTTTTAAACAATTGTCTTTTTGACTGCTC 90874 30 100.0 30 .............................. AAGCCTGTGTCGTGTGATATGTAATATATT 90814 30 93.3 30 ............................AG TCAAAATTCACCAATAAAGGCGAACAATGG 90754 30 93.3 30 ............................AC CAAAAGGCGTTGCTGTTCCGATGGGCTTTT 90694 30 96.7 30 ............................A. TTTCCTGACGAATAAAATCATGCACCAGTT 90634 30 93.3 30 ............................GC GAACTGCAAAAGGACTGCAAAGCCTTGGGG 90574 30 93.3 30 ............................CG TTGGAGCCTTGGGAAAAGGCGGTCGAGAAA 90514 30 100.0 30 .............................. GCAACAAATCGGCTAATATGGAATCATTCG 90454 30 96.7 31 .............................G ACTTAAATCGCTTAGTTTCAATCAGTCGCTT 90393 30 96.7 30 ............................G. AGGGAGAAACAACTAAGCGCGCCCTCAAAA 90333 30 96.7 30 ............................A. TATTAAAAAACGCTTCTGCTTTAAGTGTGC 90273 30 100.0 30 .............................. CTGCAATCGTGTTGAACACTGAAAGCTACA 90213 30 93.3 30 ............................AT ACACCTGCCGCAGGCTCACCATCTTTACCA 90153 30 93.3 30 ............................CC AGCATCGTCAATACAGCTAGACTTATAAAC 90093 30 93.3 30 ............................GC ATCTGGCTAAATCAAAAACATTTGATACTT 90033 30 96.7 30 ............................A. TAATAGTTCCAGTTGCCGCATCTTCATACT 89973 30 93.3 30 ............................GC TCATTCAAGTTAATAAAGACTTCTTAACAG 89913 30 96.7 30 .............................G GTACACGTGAGCTTGAGAAAGCCTACAAGC 89853 30 96.7 30 ............................G. CCAGAGGCTATCGAGAATGCGTAGCGAAGC 89793 30 96.7 30 .............................T GGCATAGATGTCGGATAAAACATTTACCTC 89733 30 93.3 30 ............................AG ATGGGCAACCAGCGCCTTTTGGCGATCCTC 89673 30 100.0 30 .............................. CCTTAGCAAAGCGTGATTCAGGTTCTTGAT 89613 30 96.7 30 ............................G. AAACTTGAGGAACGCAAAAGGCTTCAAGAT 89553 30 93.3 30 ............................AT TGATATCGTTGATGAACGTATTGCTGGAGC 89493 30 93.3 30 ............................AC CCAAGTTTTCAACGCCGTGATCCTTAATCA 89433 30 96.7 30 ............................C. AGTAACACCATTTAACGATGTGGTGAAAAA 89373 30 100.0 30 .............................. CTACTCAAGCAATGTCTACAGTTCAATCTG 89313 30 96.7 30 .............................C TAGAAGAGCGCTGTTTGAGGCAGGAGAAAG 89253 30 96.7 30 .............................C GCCATTAATAATCAGCCTGTCACCGGCAAC 89193 30 96.7 30 ............................G. CAAGCCTACAATCTTCCGATAGCTTTATAA 89133 30 93.3 30 ............................GC ATCGAGAACGTGTAATTAGTGATGAAGAAA 89073 30 93.3 30 ............................GT TAGAATTAAGCCGCATCCGGCTAAATCAAA 89013 30 100.0 30 .............................. GAAGCAATATTCCAGAACATGGTGTTGGTG 88953 30 96.7 30 ............................A. ATAAAGGCCTTTGATCAGTGAGTGCTAATA 88893 30 96.7 30 .............................C AATTTCATTTAAATTAGGGCATGGTTGAAT 88833 30 96.7 30 .............................G GGGCATAACACGGTAAGAACCGAGCTATGC 88773 30 93.3 31 ............................AT AAGTTTTGCGCTGGAACTTTACCCTTCACAA 88712 30 100.0 30 .............................. AACCAGATTTACCACGCTCAAGACCCTGCA 88652 30 96.7 30 ............................A. AATACGAGAGATTTAACATCTGCTATAGGT 88592 30 96.7 30 .............................G TTCCGCAAGATTTGAAGTTCAAGCACTTCC 88532 30 96.7 30 ............................A. TTAGAGCCACTGGCTTGCGCTTTTAAACCA 88472 30 100.0 30 .............................. ACCACGACCATTCCCATTTTAAGAAAACCA 88412 30 96.7 30 ............................A. TAATTCGCATTTTTGAATCAACAACAGATA 88352 30 96.7 30 .............................C TATCGCTCAGAGGGAGTTATTAGAGAACAA 88292 30 93.3 30 ............................AT AAGTGTCGTACATGGTGCAGCTAACTACAT 88232 30 93.3 30 ............................AG TACCGTTACCGCCTTCGCCAGACAGCAATT 88172 30 96.7 30 ............................A. ATAGCTTTCGAAGATACTTTACGTTCAGCA 88112 30 100.0 30 .............................. GTTTTTATTAAGGAGTTACTGCGGCAGAAC 88052 30 93.3 30 ............................AT TCCACTGCAAAGCAATGAGATGAAATCGCA 87992 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 87932 30 73.3 0 ...........T.....T..C...AGCG.T | ========== ====== ====== ====== ============================== =============================== ================== 56 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCTCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTTATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15965-20136 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSGV010000031.1 Acinetobacter baumannii strain KPC-SM-17a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15965 29 100.0 31 ............................. GTACTGTGAGGGTCAAGCAAACAGGAATCTG 16025 29 100.0 31 ............................. TTGTGTGATATCATTATGATGTTAATTAATC 16085 29 96.6 31 ............................G AGTAGGCAATTGTGCCATCAGGTAGCACCAT 16145 29 100.0 31 ............................. GTTGTATTTGAAGGCTTGTCTGGCGCAACAA 16205 29 100.0 31 ............................. TGATGCGCCAGAAGTTGAAGCAACTGGTAGC 16265 29 96.6 31 ............................A GTATTATCACGCAATAAGCCAAGCTCTCTAG 16325 29 100.0 31 ............................. GTCTATGTATATATTATGAATCCAAATGGAT 16385 29 96.6 31 ............................A CTAGCTTATCAAAATCTGTTAATGAAAACTC 16445 29 96.6 32 ............................C TATCCATGCCCAGTATTGCCTCAAGGCGTTGT 16506 29 96.6 31 ............................G TTGACAACCTAAAAAATGCTTTTAGCAATCT 16566 29 100.0 31 ............................. AAAACCCAACCGCACTTCGCTTGACCCTCAC 16626 29 100.0 31 ............................. CCATTGAAGAATCAGCAAGCGTATTCATAAA 16686 29 100.0 31 ............................. TTGGATTGGAACTAAATGGAGTACAGAAGGC 16746 29 100.0 31 ............................. TCCTAACTAACCGAGCTTTTCTATGTCCCAA 16806 29 100.0 31 ............................. AAGCGGGAAAAACCGAGCAAAGCGACGACCC 16866 29 96.6 31 ............................A AACACTATTGCCAAATGCACTTGTAAATGCT 16926 29 100.0 31 ............................. TAAAGCTAACATTAGAAATAAATCCTTGATT 16986 29 100.0 31 ............................. GTTAAATCTTGAAGTGCATCCGTCAAATAAT 17046 29 96.6 31 ............................A AGAATCTGCTTTGATATGGCAGAAGCGATGC 17106 29 96.6 32 ............................C ATCAAAAACGATAATACATATTGCTCGTATGG 17167 29 100.0 31 ............................. GAAAGACGGTGAAGCGTTTGCAGGTGGTGGC 17227 29 96.6 31 ............................A ACCGCAAAACCTACCCCGTCCTACGCTCAAG 17287 29 100.0 31 ............................. GATGCTGCCAATTGGCTGTTGTAACCTGATG 17347 29 100.0 31 ............................. AACGCACTGGCCACTCATCCACCTACGCGAA 17407 29 96.6 32 ............................C CAACGCGATGCAATGCTTAAGCATATTCTTGA 17468 29 96.6 31 ............................A ATCTTCAAAGTAATCATTTACACATCGATCA 17528 29 96.6 31 ............................A AGTACAGTATTGATAAATACAGCAGCAGAAC 17588 29 96.6 31 ............................G ACAAGGTTATTTTGCTATCCCCTGCTTCAAA 17648 29 96.6 31 ............................A ATATGCCACAAGGTAAATGGCAATGCGCTGT 17708 29 100.0 31 ............................. ACACCGGAGACAGCTATGCCATCGCGTACCT 17768 29 100.0 31 ............................. TCCATCAATTCAAGACGTTGCGTACCGAACG 17828 29 96.6 31 ............................C CTTCAAATGCCATAAGGAAAACTAGGGAAAT 17888 29 96.6 31 ............................A CCAGGGGGCCAGTACTTTTTGAACAGATGAT 17948 29 100.0 31 ............................. ATCAATCGATGATACTTGTCATACCCTTTTT 18008 29 100.0 31 ............................. TTGATGTGTTCAAGGTTTCCCAAAGCTGTAT 18068 29 96.6 31 ............................A TGATGATATAATTGTTACAACCACATTACCC 18128 29 96.6 31 ............................A CCAGAACGACAAAAACTAGGTGCAGTCACTT 18188 29 96.6 31 ............................C ATGAGCTGGAAACGTCCCCAAGATGCCGACT 18248 29 100.0 31 ............................. TGCATGGATACGTTCTGTGCAAGGTTTTTTT 18308 29 96.6 31 ............................G AGTATGTGGCGAAAGAATCAATCACAGTAGT 18368 29 96.6 31 ............................A AAGAAGAAGCTGCTGCATATCGTGATGCAAT 18428 29 96.6 31 ............................A GTTCGTAGAAATCGTTTTAGATCACCTTTTA 18488 29 96.6 31 ............................A TAATAGAAGGACTATTAGCTTCTAATGATAC 18548 29 96.6 31 ............................C CTAGCTGCAATTAAGATTTTATCGCGGTTTT 18608 29 100.0 31 ............................. TTCTTCTGGTGTGGATCCAAAAAGTCTAGTG 18668 29 96.6 31 ............................A ACCCAATCGCCAATATTAAAATTACTCATTA 18728 29 100.0 31 ............................. TCTGGTAAGCCTATAATGGATAGAATTGTTG 18788 29 100.0 31 ............................. TGATCGTACTTATCTTGGTCATGGATTTGTA 18848 29 96.6 31 ............................A AATGCACTCGTCATGAATCCAGACTTTAACA 18908 29 96.6 31 ............................A TTTAGCGAAGTTGTAAAAAATTGATTTGGTA 18968 29 96.6 31 ............................C GAGCCGTTAGTGGATGGTGAAACTAAAGAAA 19028 29 100.0 31 ............................. TCCCAACCCGTAAGCCAAGTTGCATCTTGTG 19088 29 96.6 31 ............................A TTAGCCCTAACATGCTCAGGACGCGGAACTT 19148 29 96.6 31 ............................A TGCGAGGCAAGAAAAAACGCCGTGTAAAGAA 19208 29 96.6 31 ............................A GAGGTCTTCACCATTGGCCACATTGCTAGAT 19268 29 96.6 31 ............................A ATAAAAAGTATCTCCACCCGGATTAGCTGAA 19328 29 100.0 31 ............................. TAGTCATGTAACCAAGATAAGAAAGTCCGTG 19388 29 100.0 31 ............................. TGAGCAATAGCAAGGCGAAGTAACTCAATAA 19448 29 96.6 31 ............................A AACTCGCTCCCACATAGGGGCATTTTCATCT 19508 29 96.6 31 ............................A CAAAAAAAGCAGCCGAGGCTGCTAAAATTGC 19568 29 100.0 31 ............................. GTATCTAATGCTTTCGCAGCTTTAGGGGAGA 19628 29 100.0 31 ............................. AGTTGACACATAAGTTTAGATGGCTGTTTCA 19688 29 100.0 31 ............................. TGCTGCAACATTGCCTACATGGTCAATTAGA 19748 29 96.6 31 ............................A GAAGTATTTTTTGCAGTCACCTTGCGGTAAT 19808 29 100.0 31 ............................. TACTATCAAGATGATCATGTTGTGCATCCAT 19868 29 100.0 31 ............................. CAAATAGCAGTAGGATTGCGAAATTTATAGA 19928 29 100.0 31 ............................. TGTCGCAATAAAAAAGCCCGACATGTGCCGA 19988 29 96.6 31 ............................A ATTAAAAACGGCGCCTTCAAGGCCCTGTGGA 20048 29 93.1 31 ..........A.................A TTACCACGGCGAGCGGCTTTTTGCTCAATCT 20108 29 79.3 0 ...................G.AA..G.TA | ========== ====== ====== ====== ============================= ================================ ================== 70 29 97.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTATTAAAATCAAATAAAATCAAACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATTAATCGTATTTAATTATTTGATAGTCAAACTAAAACTATTTTATTGAATAGTATAGCGTATAAATTGATAAATCCAATCAAAATAACTATTTAGTTAACTAAATCTTGATTGTGTCTAGAGTCTATTTTACTCATTTTAAGTATTAATAATTTAAGTAATACATTGTTCTTTAGTTAATTTATTCATCTTAAAATCAATAGAATTTTTTGAGGATTTTCTTATAGCACTTATTAGATGAGCAATATGTATACTTGCTAGAGTTTGATTAATATTAGTTAGTCTCCTAACTACTCAAAATAGGTGATAGAGAATAAAGCGGAATGACATTATCGGCCAATAAAAAAACAGTAAAAAATACAAAAACAATTATTCACTTTGTTGAAATTAAGGTTTTTCTGTATATTTTAATGATCCTTTCAAATTTTTTCTTAAAACTTGTTTAACTAAAGGATATTTTAATCAAGCTTCTTCCGATAAGATCAAACTTTACTCTCTA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //