Array 1 3549544-3549750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061699.1 Pseudomonas aeruginosa strain LYSZa7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3549544 28 100.0 32 ............................ CTGGACGACGCCGGTAAGGCCGAATTCCTGAA 3549604 28 100.0 32 ............................ TTTCGGGACTGCGGTCTGTACGCAGATTGAGT 3549664 28 100.0 32 ............................ GACTTCGTCTGCAAGTGCCGCGCAATCCAATT 3549724 27 89.3 0 ......-...........T........G | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGATATGTGTCCACGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCACGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCTCATCACAAGACCTTTCGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAGAGGGTTTCTGTCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTCTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGAATAACCGCTTGCGGTTATCCGCCCTACGGATCAGGACTTCGGAATGAACTCCTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCTATGTCTGCGGTCTGTACAGACGCTTGCAAAAGGGACTCGCCTGGGAAGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCTGCACATTCAGACTCAAGAGCACGAGGGGCAGAAAGTGGCCAGCCTCAGGCCGGCAACACCGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGTAGCAGGGCGGCGAGGCGGCAGAGGTCGGCGCAGTCGCCGGCGTGCTGGCGTTGTTCCCCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3935847-3936536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061699.1 Pseudomonas aeruginosa strain LYSZa7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3935847 28 100.0 32 ............................ AAGGCAGTACAGGCGCTTGTCGGGATGACATA 3935907 28 100.0 32 ............................ TGACAAGCCCCCTGCATCGCTGGCGTGAGTAC 3935967 28 100.0 32 ............................ TAGGTGCCTCAGATGTGCTTGAGACACACGGT 3936027 28 100.0 32 ............................ GCTTAAGGGGTGCATCATGGCACGCAAGACAA 3936087 28 100.0 32 ............................ GACAGGGCGAACTCTAGTTCCATCCAATGGGG 3936147 28 100.0 33 ............................ ACTCCCCGCAGAGCGCGACACGGAAGGGTTAGA 3936208 28 100.0 33 ............................ ACTGGATTACAGCAGTACCCTTCGGGCCTTCCA 3936269 28 100.0 32 ............................ ATCCGGACGCACGCCTTGAAAGCCGGCGATCA 3936329 28 100.0 32 ............................ TACGACAGCGGCGTGACGCTCGGCCAACAGCG 3936389 28 100.0 32 ............................ ATCGAGCACGCGGACGACCTTGCCGATCAGTT 3936449 28 100.0 32 ............................ ACCGACGGCGGTATTGACTGGAACGCGTTACC 3936509 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGTACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3947176-3945408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061699.1 Pseudomonas aeruginosa strain LYSZa7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3947175 28 100.0 32 ............................ ACCAGGGTCCGGCCGGCGCGGAAGTTGTCCAT 3947115 28 100.0 32 ............................ TCGATCTCGACGTAGCCGACGCCGAGGCGCTG 3947055 28 100.0 32 ............................ TCAACCCGGAGGATCGTCCCCGCAACCCAGTC 3946995 28 100.0 32 ............................ ATCCGGCGACGCATTCCGTAGCGCCACGCCCT 3946935 28 100.0 32 ............................ AAACACCCGTTGCGCTTCGTCGATCACGATCA 3946875 28 100.0 32 ............................ AGACCCTTCTTTTCCGTCGGTGAGCCCTTCTG 3946815 28 100.0 32 ............................ ACGAAAATTGCTAGCAATCGTCTCGATTGAAC 3946755 28 100.0 32 ............................ ACAGAGCGCGCCTTCCATCAGCGCTTGTCGAC 3946695 28 100.0 32 ............................ ACCATGCTCCGCTTGATCAATGAGAAGGCCGA 3946635 28 100.0 32 ............................ AAGCTGTGCTTCGAACACCTCGGCATCAAGGT 3946575 28 100.0 32 ............................ AGGACGCTATGAGCGATGCGGGCCTCTTGGTT 3946515 28 100.0 32 ............................ ATCACCGCCGCCACCTGTGCCGCCAGTGCCAC 3946455 28 100.0 32 ............................ GGACTTGCCGCCAGATTTGTCCATCCCCCACA 3946395 28 100.0 32 ............................ TCGCGCCCTGATCACCCAAGCGTGCGTATCGC 3946335 28 100.0 32 ............................ TGTCCAATGATCTGCTGCGCACGCGGATCAAG 3946275 28 100.0 32 ............................ AGTCGATTTACTCCGCAAGGCCATAGAGGCCG 3946215 28 100.0 32 ............................ TATGACCGGAGGCTGTTTCAGGGGGTGCAACG 3946155 28 100.0 32 ............................ AGTCATCCAGCCCCATCGCGTAAGTGGTCCCG 3946095 28 100.0 32 ............................ GATACAGATTCCCAAGCTCATGACGAGGGTTC 3946035 28 100.0 32 ............................ ACACTCTGGGCAAGCTGCCGCCATGCAGTTCT 3945975 28 100.0 32 ............................ TGCATGGAGTCGCAGACGCCTACACGCATCAG 3945915 28 100.0 32 ............................ GGCAATGAACGCCTGACTGCCAGTGCCCTTGC 3945855 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 3945795 28 100.0 32 ............................ AGCATGTTTGCGAGAGCCGCCTCGTTGACCCG 3945735 28 100.0 32 ............................ ATCTGCGCCCGCTCGCGCAGGCTGTCGTCGGA 3945675 28 100.0 32 ............................ TGCTCATCATCGAGCCCGGGGAACTGGCCGAT 3945615 28 100.0 32 ............................ GCAACCTGGAACTGCTGAGCCGTCACGTCGGC 3945555 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 3945495 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCTA 3945435 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGATGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTTCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 5908839-5909767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061699.1 Pseudomonas aeruginosa strain LYSZa7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5908839 28 100.0 32 ............................ TTCAAAAATTCGCCCAGGTGATCCCAGATGCG 5908899 28 100.0 32 ............................ GGCAAGCCTGAGCGTGTCGCGCCGTGCATCGC 5908959 28 100.0 32 ............................ CGGTGGGGTGGGGGTGCTGTAACACCCCCAAT 5909019 28 100.0 32 ............................ TTCGCCGCCTGGATACCGATCAGCAGCAGGTA 5909079 28 100.0 32 ............................ TTGCCGGTGGCAAGCTTGGCCTGGCGCACAAG 5909139 28 100.0 32 ............................ GTAGTGGTTGCCCGCGATATCGACTTTTCCAC 5909199 28 100.0 32 ............................ GAGGAATTCGAGGGTAACGTCCTTGCCTGCGT 5909259 28 100.0 32 ............................ ATACACAGCCGTGCGAACGACTGCACGCGTGG 5909319 28 100.0 32 ............................ GGTCAGCGGATCGGTGATGTTCTGTCGATCAA 5909379 28 100.0 32 ............................ ATCCCGACGACGTCCTTGCCGAAGTCCAGGAA 5909439 28 100.0 33 ............................ ATGACGCTCATGCTCGACGGCGATCAGGTCCAC 5909500 28 100.0 32 ............................ GCGACTGGGGCCGTGGCAAGGATCGCGGCCTG 5909560 28 100.0 32 ............................ CTTGTCGCGGATGTACGCATCGCCCCAGAGGT 5909620 28 100.0 32 ............................ ATGATGGTTTTTCGGTTCTGTCGGACACAGTC 5909680 28 100.0 32 ............................ GCGGGAATTTCACGGCGAACAACTCGCCTCTC 5909740 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAACCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAGAATCCTCGCCCTGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //