Array 1 701-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZK01000003.1 Salmonella enterica subsp. enterica serovar Blockley strain 86-0206 NODE_3_length_435868_cov_3.8515, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 700 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 639 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 578 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 517 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 456 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 395 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 334 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 273 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 212 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 151 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 90 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1127 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZK01000012.1 Salmonella enterica subsp. enterica serovar Blockley strain 86-0206 NODE_12_length_181407_cov_3.75359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 96.6 32 ..A.......................... GATGCGATCAGGCTGGCGATCAAGCAGATGTC 63 29 96.6 32 ..A.......................... ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 124 29 96.6 32 ..A.......................... GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 185 29 96.6 32 ..A.......................... TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 246 29 96.6 32 ..A.......................... GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 307 29 100.0 32 ............................. CGAGAGATCATAGACCAATGGACTGAAAGACT 368 29 100.0 32 ............................. AATTGATCACAATCCTGTATAAGCTGCGCAAA 429 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 490 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 551 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 612 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 673 29 96.6 32 ........................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 734 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 795 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 856 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 917 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 978 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 1039 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1100 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17398-18160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZK01000012.1 Salmonella enterica subsp. enterica serovar Blockley strain 86-0206 NODE_12_length_181407_cov_3.75359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17398 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 17459 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 17520 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 17581 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 17643 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 17704 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 17765 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 17826 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 17887 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 17948 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 18009 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 18070 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 18131 29 93.1 0 ............TC............... | A [18158] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //