Array 1 281796-282922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMF01000013.1 Pseudomonas aeruginosa strain AZPAE15067 AZPAE15067_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 281796 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 281857 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 281918 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 281979 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 282040 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 282101 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 282162 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 282223 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 282284 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 282345 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 282406 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 282467 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 282528 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 282589 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 282650 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 282711 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 282772 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 282833 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 282894 28 79.3 0 A..........A..C..-.....A....T | C [282898] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 292095-293711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTMF01000013.1 Pseudomonas aeruginosa strain AZPAE15067 AZPAE15067_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 292095 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 292156 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 292217 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 292279 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 292340 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 292401 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 292462 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 292523 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 292584 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 292645 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 292706 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 292767 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 292828 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 292889 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 292950 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 293012 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 293073 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 293134 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 293195 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 293256 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 293317 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 293378 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 293439 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 293500 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 293561 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 293622 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 293683 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //