Array 1 3429-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNKX01000114.1 Xanthomonas oryzae pv. oryzae strain HUN20 scaffold113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3428 31 100.0 35 ............................... AACAAAGTGCTCAGGTAGGAATGGGGATCCTTCCT 3362 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 3296 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 3230 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 3165 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 3098 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 3032 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 2966 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 2900 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 2833 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 2767 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 2702 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 2636 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 2571 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 2506 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 2440 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 2374 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 2308 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 2242 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 2176 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 2110 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 2045 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 1980 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 1914 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 1848 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 1783 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 1718 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 1654 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 1589 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 1524 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 1460 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 1394 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 1329 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 1262 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 1197 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 1129 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 1063 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 999 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 934 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 867 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 803 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 736 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 671 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 605 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 540 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 473 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 408 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //