Array 1 429016-430082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027260.1 Pectobacterium parmentieri strain IFB5427 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429016 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 429077 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 429138 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 429199 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 429260 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 429321 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 429382 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 429443 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 429504 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 429565 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 429626 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 429687 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 429748 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 429809 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 429870 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 429931 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 429993 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 430054 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 431952-432651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027260.1 Pectobacterium parmentieri strain IFB5427 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431952 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 432013 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 432074 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 432135 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 432196 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 432257 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 432318 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 432379 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 432440 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 432501 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 432562 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 432623 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4047991-4050053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027260.1 Pectobacterium parmentieri strain IFB5427 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4047991 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 4048052 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 4048112 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 4048172 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 4048232 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 4048292 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 4048352 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 4048412 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 4048472 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 4048532 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 4048592 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 4048652 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 4048712 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 4048772 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 4048832 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 4048892 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [4048945] 4048945 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 4049005 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 4049065 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 4049125 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 4049185 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 4049245 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 4049305 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 4049365 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 4049425 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 4049485 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 4049545 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 4049605 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 4049665 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 4049725 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 4049785 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 4049845 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 4049905 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 4049965 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 4050025 28 85.7 0 A...........GC..........A... | G [4050050] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4064759-4066352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027260.1 Pectobacterium parmentieri strain IFB5427 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4064759 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 4064819 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 4064879 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 4064940 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 4065000 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 4065060 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 4065121 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 4065181 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 4065241 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 4065302 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 4065362 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 4065422 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 4065483 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 4065543 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 4065603 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 4065663 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 4065724 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 4065784 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 4065844 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 4065905 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 4065965 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 4066025 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 4066085 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 4066145 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 4066205 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 4066265 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 4066325 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //