Array 1 3015909-3017461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045516.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4737 chromosome Sal-4737, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3015909 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3015970 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3016031 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3016092 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3016153 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3016214 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3016275 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3016336 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3016397 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3016458 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3016519 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3016580 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3016641 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3016702 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3016763 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3016824 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3016885 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3016946 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3017007 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3017068 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3017129 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3017190 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3017251 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3017312 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3017373 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3017434 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033776-3034293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045516.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4737 chromosome Sal-4737, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033776 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3033837 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3033898 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3033959 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3034020 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3034081 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3034142 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3034203 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3034264 29 93.1 0 ............TC............... | A [3034291] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //