Array 1 347-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000019.1 Bifidobacterium dentium strain 1893B Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 346 37 100.0 38 ..................................... CGCCGATCTGGCGCCGTTGTTCGACGCACTGGAGGAAC 271 37 100.0 34 ..................................... ATAACCAGCTGTATCTGTCCGCACGGCATAAGTT 200 37 100.0 36 ..................................... CGCCTTCGTATGGTTCGGGCTCGCCCCACGGCAGCC 127 37 97.3 34 ....................................G CGGACGACGCGGAATTCAAGAAATACGCGGGCCG 56 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 99.5 36 ATTCCTGAGCTCTAATACTCAGGACTTCATTGAGGTT # Left flank : TATTTAGTTGCATATGATGTGAGCGATGATTACCGTCGCAGTCATGTAGCGAAGATTCTTCAGCATTATGGAGAACGGCTGCAATACAGTGTTTTTCTGTTGCAAGTGCGCCCCTCAATGATGCTCAACGTACGTATGAAGATTGAGAAAGAGATTGACTATGGAACCGATTCTGTTGTGTTCTGCTCATTGGGGACAATTGCGCAGACGGAAGAGGGATTGGATTTTCTGGGGCATCGAGGATATGCAGACTTAGAAATTCCCACAATTATTTGATTTCAGTCAAAACGGCTGGGCTGTTTGATAACTAAAGAGTGTTTCGTCTTGCATGCGCACGAGAGGTGAATCACTTCTGAGACGCGCGGCAAGCGCTCGCATGCGGAAAATGGCGTTTCTGTGGGATTCAGCGTTCCCAGATTCGCATTTTTCATAGGGTATGAAGTACATCGCTCGCATAATTGCTTGAGATACATGTCACCACAACGCTCTACACTAAGACT # Right flank : TGGTGTCAGACCGCGAACAT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTCTAATACTCAGGACTTCATTGAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 392-1157 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000020.1 Bifidobacterium dentium strain 1893B Contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 392 36 100.0 37 .................................... GCAAATACGAGGACAGCAAGAACGCTCTGCGAGACAT 465 36 100.0 38 .................................... GTGATGCCGTACTCCTTGCCGCCGGTCACGTAGTGCAG 539 36 100.0 36 .................................... CTCAGGGACAATCTCGACCGGGCGGGCATGCCGTCC 611 36 100.0 38 .................................... TTTCCGGCATGGAATTGCACCACGTCATGGATGAGTAG 685 36 100.0 38 .................................... ATGAAACGCCCATGCATGCCAAAACGAAAAGGTTTATA 759 36 100.0 35 .................................... AAAAGCCTGAAATCGACCCTCTTTTCCACTGACAA 830 36 100.0 35 .................................... CCCATGTTCACATTCGGGTCGTTTGTCGTACCTAT 901 36 100.0 37 .................................... ATACCGAGTCTTCGAGCATGATTTGCCGCAGTTCGAC 974 36 100.0 38 .................................... AACACCGCAAGCTGGTTATTATAGGCTTGACCGCGCAC 1048 36 100.0 38 .................................... TGCACCAGCTCGTGCACGAGGGTACAGCGCTTGCCCGT 1122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : TTCAGGTTTTGCAAAAAGCTGGTTTTCTTCCAACGATTTACGATTGCCATGTTGGAGTGCGGATCAACTGTAGCCTTCGGAAGTTGACGCTCTTCTGCTTCGGATGCGTATAGTAATCCTACATTTCCATTCATTTAATTAAGTCATAGAAGCGACGATGGATTTGCCTTCTGGGACAAAAGGTATAGGATAAGGAAACGTAAAGGAAGAAGGGTCTCTGGCGGATTTGCAGATCCGCCAGAGACCTGCGAAACGGAAAGAAGGTGATAAGGCATCATGGCCGCCGCCCGCTTTCTGGCTCGTATTTCTAAGGCATAGAAACATGAGCCAGTATAGCAGGCGGAAAAGAGAAACGCGGTGTTCGTCTTTTCGCCGCAAAGCCGCTACCGCGA # Right flank : TCCGGATTGATTTCGACGTGCTGGGCCATGATGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGGCGGCTGGAAACGGCATCGGCGGAAGAGAAGCGCCGGTGCCGTACGGTTCCTGATAGATTCCCGAGTGCTAACAACCAACACATGGTCCTCGGGAGGAAAGGAATGACGACACCGGTGCGTGTTCAACAGAGTATCAGGCAGCTCGAGACGAAAGGCCTGACGCATGCCCAGATAGCAAGGGAACTGGGGGTCTCGCGGACGACCGTGGTCAAATACGCTTCCCGCGACTATTCCCCGGTTCCCGCGGCGGGGAGGGAGGGAAGCCGGTCGCTGGTCGTGGGCAGGTACGCGCGCAAGGCCGACGAATGGCTCGAGGCGGACCGGCGCATGCCGCGCAAGCAGCGGCATACCGCCCGGCGCGTGCACGAACGGCTTGTGGAGGAATGCGGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2553-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000021.1 Bifidobacterium dentium strain 1893B Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2552 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 2481 36 100.0 36 .................................... AACCACCACCGCATACGGAAGCATCTTCGAAAACCA 2409 36 100.0 37 .................................... GCCTTCAGTAGAATCAGGTTTCATATCTTGCTGGCCG 2336 36 100.0 38 .................................... CGCCATCAGGGATTATTGCGACTCCAATCTCGTATCGA 2262 36 100.0 36 .................................... GCATTGGCCTCCGCACAAGGCGCAGACCCGGACCAG 2190 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 2120 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 2050 36 100.0 38 .................................... CTTGCATACGTGTGGCTGATCTATCCTAGCTACATCCT 1976 36 100.0 41 .................................... TGGCAATTGCGAAAGCACTTGATCTCACTGTTGCTGATCTT 1899 36 100.0 38 .................................... CGTGGCGCTGACGTCGGTTATATCCCTATTATTTGCGC 1825 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 1751 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 1677 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 1606 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 1534 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 1463 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 1392 36 100.0 37 .................................... CGGAAGTATGGTACCATTCGCAGAACCGTCGCGACCA 1319 36 100.0 38 .................................... TAGACCACGGTACGTACCTGCTTGCTGAACACCGGCGT 1245 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 1173 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 1098 36 100.0 35 .................................... ATGCGCAAGACCAGCTCGACAAGCTTACCGGACAG 1027 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 953 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 882 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 806 36 100.0 36 .................................... CATGGCGAGGATGCCGATTCTCGCGCCGAAGGGCCT 734 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 664 36 100.0 36 .................................... TTCTTCATATCGGTCCACGAGTGCGCCATGTTTTCC 592 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 520 36 100.0 38 .................................... GATACCGAGTCCTCGAGCATGATTTGCCGCAATTCGAT 446 36 100.0 37 .................................... AGCACCCGGTACGAAATGGTCACGCATCGCGCCTCAT 373 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 300 36 100.0 36 .................................... GAGTCCCCGTTATGACATCGGCACGGTTTTCGACGT 228 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 154 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 82 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 35 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : GCTGGCGTGCGAGAGGGGCATGCCGGTGAGGTTCTTCACCGCGTCGTCGCTGGTGATGCGGCTGCGGCGCGCGAGGGACGAGAACCGGCTCGACGCGGAACTGCGCGCGATAGGCCGTGCCAGGCTGCTGGTCATCGACGAGCTGGGCTACCTGCCCATCGACATCGACGGGGCCAGGCTCCTGTTCCAGGTCGTCGCGGATTCCTACGAGAAACGGAGCGTGGTGTTCACCACGAACCTGGAGTTCGGGCGGTGNGGCGAGGTTTTCGGCGACGGCGACATGGCCGCCGCGGTCATCGACCGTATCGTGCACCACGGCAGGATCGTCAGGTTCCGNGGCGAGTCGTACCGCAACAGCCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGCC # Right flank : TTGCGTACAGCCATCGCCAATGAGGGCGGCCTAAATCAGACCTCAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 6-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000023.1 Bifidobacterium dentium strain 1893B Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 38 .................................... AACACCGCAAGCTGGTTATTATAGGCTTGACCGCGCAC 80 36 100.0 38 .................................... TGCACCAGCTCGTGCACGAGGGTACAGCGCTTGCCCGT 154 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : TCGACA # Right flank : TCCGGATTGATTTCGACGTGCTGGGCCATGATGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGGCGGCTGGAAACGGCATCGGCGGAAGAGAAGCGCCGGTGCCGTACGGTTCCTGATAGATTCCCGAGNGCTAACAACCAACACATGGTCCTCGGGAGGAAAGGAATGACGACACCGGGGCGTGTTCAACAGAGTATCAGGCAGCTCGAGACGAAAGGCCTGACGCATGCCCAGATAGCAAGGGAACTGGGGGTCTCGCGGACGACCGTGGTCAAATACGCTTCCCGCGACTATTCCCCGGTTCCCGCGGCGGGGAGGGAGGGAAGCCGGTCGCTGGTCGTGGGCAGGTACGCGCGCAAGGCCGACGAATGGCTCGAGGCGGACCGGCGCATGCCGCGCAAGCAGCGGCATACCGCCCGGCGCGTGCACGAACGGCTTGTGGAGGAATGCGGCTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 114042-114223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000004.1 Bifidobacterium dentium strain 1893B Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================================================================================================= ================== 114042 26 88.5 26 ...................C.A.G.. ACAACCCAAACTACCGACGCTGACGA 114094 26 92.3 25 ..A....................G.. CGCCTCAATCTACCGACACCCACAC 114145 26 100.0 26 .......................... AACAACCCAAACTACCGACGCTTAGA 114197 26 69.2 0 GG....A.G......T..T...GG.. | A [114201] ========== ====== ====== ====== ========================== ================================================================================================================================= ================== 4 26 87.5 69 CCGCCTCACCGTCGGCAGATTGAAAA # Left flank : AGCTTCATCAACACCTGTGCGGAAATCTCCTGCGGAGTCCACTTCTTGCCGTCGATCTCAACGGTCCAGTCAGTGCCCATGTGGCGCTTGACGGAGCTGATGGTGCGATCGACGTTGGTCACGGCCTGACGCTTGGCGACCTCGCCGACCAGAATCTCGCCGGACTTGCTGAATGCCACGACCGACGGAGTGGTGCGAGCGCCCTCGGCGTTCACGATAACGGTGGGCTGGCCACCTTCAAGAGTTGCGATGCAGGAATTGGTAGTACCCAAATCGATGCCAACTGCGCGTCCCATAACTTATCTCCTTTGCAGATTAGGTTCGCTATACGTTCTTTCGTTCTTCGCTCGAGTTCCGGATTGCCGTCTCTCGTGCTTTCCAAAACTTGAGCCTACACCACTCAACTTTTGAACGCAACTTTTTATTCCCGAATCCACAAAAAATTCTTGAGCCACCTTCGCTCAACTTTGTCGATCCCCTCAATCTACCGACGCCCACAC # Right flank : AAAGGATGGGCGACCTAGATCAGCGGGTGATCTTCACGGTCTTGATGATCATCGCAATGGCAGCCAACATAGCCACGGCGATCACGACGACGGCCACCGCGGTACCGGTCTCACCGAGCGGCGAGCCGTCGGCCTTCGGATTGTTGTTGACCTTGCCGGAAGCGATCACACCGTTCTTGTCGGCATTCTTGTCGGCGTTCTTGTCAGAAGAACCGGCGGCCGGAGCCTGGAAGTCGACGGTCACGCTCTTGCCGGACTGGCGTCCGGTGACGGTAAGCGTATATTCGTTGCCTTCGGCCACCTTGTCGAGTGCGATCGCGGTGGTCTGCGCGGTCTTGACTCGCACACCGGAGAGCGGAGTGGTGGAATCGGAAGCGGCGATCACATTGCCCGATTTGTCCTTCAGCTCATAGCCGAGCACGGCATCACCGTTGAAGCCCGTCGCGTCGGCGGCATACGAGCCGTTTTCGGTGGCGACCTTGACTTCGGCGTTGTCGGAC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:3, 4:0.38, 5:-1.5, 6:0.25, 7:-0.35, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCTCACCGTCGGCAGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 2629-2016 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQE01000014.1 Bifidobacterium dentium strain 1893B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2628 36 100.0 28 .................................... TTGCCTCGGCGGAGCCATTGGCTTATGA 2564 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 2500 36 100.0 28 .................................... GCATCGGAGGATCACCGGCTACACCGCC 2436 36 100.0 28 .................................... CCTGCCGTGAGTCGAAGTGATCCGGCAG 2372 36 100.0 28 .................................... TAATGTACGCTCGCCAAGCCATATCCGA 2308 36 100.0 28 .................................... ATGGAATCCATGGATACGCCTTGACGAT 2244 36 97.2 28 ........C........................... TCAAAAACCTCTCTGGTGGTCAGAATTG 2180 36 97.2 28 ........C........................... GCTGTGACAGTGTTGTGACAGTGTTGTG 2116 36 97.2 29 ........C........................... TGACGTGCATGTGGTGGTTTCCGACTTGG 2051 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 98.9 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //