Array 1 5735-4274 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFT01000226.1 Planktothrix agardhii NIVA-CYA 34 contig00180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5734 37 100.0 39 ..................................... ATCTACCTCTCCCGCATCGGCACGGTCTTTATAGTTCTG 5658 37 100.0 38 ..................................... GTCCTAATAAGTAGCACCACGAGGCATCGAAGCTTTTT 5583 37 100.0 41 ..................................... TTTCCGCTTCCCACCCCATGCCCATTCAACTGTAATTTTAT 5505 37 100.0 39 ..................................... CAATTCATATTTATAATTTTGTAAACGGATACATTTCTC 5429 37 100.0 40 ..................................... GTCCCCCTATTAATTAGGCGATTTTGATAAACTTGGTTAA 5352 37 100.0 37 ..................................... GAATCTGAATATCCGACCTGGAAACGAGGGAAAAATA 5278 37 100.0 36 ..................................... TGTGACGATTATAAAAACCAGTTAGAACATCGGTTC 5205 37 100.0 39 ..................................... ATCCGTCCGATCCTCTGGTGACTTCAACGGATTTGACAT 5129 37 100.0 36 ..................................... GATTTAGCAATTTATTTATCAATGCGAGATTGTTCA 5056 37 100.0 37 ..................................... ACATTTAAACCGGGTAATTAACCCGGCTTAGATTAAA 4982 37 100.0 39 ..................................... ACTCAGGACACGCTAGTTTTAAGATGCTAAAATAGTCAT 4906 37 100.0 37 ..................................... TTAAGCGAAATGAAACGCTTAACTAATAACAACAATA 4832 37 100.0 39 ..................................... ATTGTGGGATGTGCAACCAACAAACAACCCAATAACTAA 4756 37 100.0 36 ..................................... CAAAGGATGGAAAACCAAAAACCAATACAATTAAAA 4683 36 97.3 36 ........................-............ TTTGGTTTTGACCGTCTCAACTTCTCGCTTTTCAAT 4611 37 100.0 36 ..................................... CTCGTAGGCGGTGGTGATCATAAACCTTGAATCCTT 4538 37 100.0 46 ..................................... TTAATTGAAAGATATTTCCCGCTAAACTCCAACACGGAATCCTTAG 4455 37 100.0 34 ..................................... CTCTTCTTTCTTCTCACCGGATGCAATCATGTCA 4384 37 100.0 37 ..................................... CGGACAGGATTCAATGTCAAATCTTGGCTGAACTAAA 4310 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 20 37 99.9 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : CAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATTAGCCAAAAGTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGATTTATTGTCGGGGAATGATAGCCATTGATTATGAGAAGATTAAGAATTATAGCAATCCTATTTGAGTTGTGTAAAAGGGAACAGGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATA # Right flank : TCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGCCCTCGTTATTGCAACAGATTATCAATAACTAATCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCATGACCTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGTTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGAGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 623-1024 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFT01000187.1 Planktothrix agardhii NIVA-CYA 34 contig00513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 623 36 100.0 37 .................................... ACCTTCTAAGGTTAGGATTTGTTGCAGTTCGGCTTCA 696 36 100.0 35 .................................... TGAACACTAAAAATTGGGGTCGGCGCGAGGGATGT 767 36 100.0 36 .................................... GTAACTGTGAGTTTAAGTTACTGATTTGATATTCTT 839 36 100.0 38 .................................... TAAAGGAAGTAGACCGTCTTGTTGAGCGGATATATCAG 913 36 100.0 39 .................................... AATCAATCTGGGATAAGGTAAACACTTGATTAGTTTGAA 988 36 88.9 0 ..............................C..TCG | C [1018] ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 37 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTCTAAAATAAAAGCTAATAACTATAATAATCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTATATGTTGACTACTCTTTCAACTATTTGTTGACTTTACTAACTTCTAATTGCGATATCATATCTTGTATTTCATTATTTTATAATTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTACACTTTTAAGCCAATATTGGCTAAATACTTCTTACAATGAACTAGCGTTGAGCGATTGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATTAGATGCTATAGGTTTTTGCGAGGCTCAGGCAAAATGGCTGTAATGCCGATTCTGTTGTCGGGAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTCTGATTTAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCACTAAAAAAAAAGCCCCAGTTTTTACTGGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTCCTCGGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGTTGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAGAGTCGGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTGAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGAAAAATAAGTTTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGCTCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCAGGATTTTCGGCTGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAGGTTCCGGTTTTCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 52587-51756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFT01000021.1 Planktothrix agardhii NIVA-CYA 34 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52586 36 100.0 35 .................................... AGCCGGGGGCCTCATTCCTAAGCGCGAATCATATT 52515 36 100.0 36 .................................... TCAGGTGTTCGTTGTTCTTGATTGGATAGGGGAATA 52443 36 100.0 36 .................................... AGGGTTTGAAGCCACTGGTTTTGCGTGGGCATTAAG 52371 36 100.0 36 .................................... ACAAAATCTCTAAATCTCACAGACGCATCCTATCGC 52299 36 100.0 31 .................................... GGCATATTAGACGCAGCTATGGACACGCGGA 52232 36 100.0 40 .................................... TGAATACTTCTTTGTTACAGATAATAAAGTGTTCCGCATT 52156 36 100.0 38 .................................... AGTGTATATAAGAGTCTGGACTAATAGGGAGATACATT 52082 36 100.0 30 .................................... TCCATGATTGAGATTCATAATTTAACTTGC 52016 36 100.0 36 .................................... TTCTTTAGGCGATAGCCAACACGCTTCTTTCTTCAT 51944 36 100.0 41 .................................... TAGAAATTGATACTACTTCCAGTGAGAGACTTCACCTCAAC 51867 36 94.4 40 GG.................................. TCTCCTTGTTCTGGTGATTACGCTTGTCGGTGTGCCTATC 51791 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.5 36 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTCTATATTGTTGCCTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGGAAGCGGGTTCAATATTCGGTGTTTGAGTGTGTGTTGGCTCAATCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAGGTAAATCTAGCTGAGGATAATCTGCGGTTTTATCCGCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGGTGTTTATAGCTTCGCTATCCCTCTGGATAGGGGTTCTGACGTTTTGATTCAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTCTGAGCCCCGCAAACCCCCCCTAGACAACCGATGACAACTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGGGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAAGCATTCCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTACAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTGAATCCGATCACACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 33100-34186 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFT01000034.1 Planktothrix agardhii NIVA-CYA 34 contig00056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 33100 36 100.0 42 .................................... GTTCCCACATCGTATCGTAGTCAGTAGAATTAGAATTAACTC 33178 36 100.0 36 .................................... GAGAGCTTGGTTGGCAGAAGCCGAGGCAGGAGTACA 33250 36 100.0 36 .................................... TTTGTAGCCCCCAGTTGGTATGTTAAAATTCCGTTG 33322 36 100.0 39 .................................... TTCAGGGCTTTGTAGGCGTTCATCCACTTATTGTTTTTT 33397 36 100.0 39 .................................... TGCGCTTGATTGCGTCTTTTTTTGAACATCCCCATGCTG 33472 36 100.0 40 .................................... TCATCAAGGGGTGAATCTTTCAAGTCCATTTGGTAAGGAA 33548 36 100.0 46 .................................... TCATATTCAGGAAAAGCTTCTTGGATAAAACAATCAACGTTTTCTA 33630 36 100.0 44 .................................... AAGGGACGCTCTGGCATCACTCAGGATTTTATTCATTTGTGCTT 33710 36 100.0 37 .................................... CCAAAATAAGGGAGTCAGGAGAATTGATTTGTTTTAT 33783 36 100.0 40 .................................... CTTCATTTGTCGTGATTCATTAGACATGATTGATTCCCCT 33859 36 100.0 37 .................................... ACCATCATATCCATGACTTTTTTAACGTTTGATAGAC 33932 36 100.0 38 .................................... TATTCGCCTTCTGGCAGTTCAGTGGGCTTCACGATTTG 34006 36 100.0 36 .................................... TTGAAGACTTTATGCCAGTTAATTTCAACACCCCAA 34078 36 100.0 37 .................................... TGGATTAGGCTGTAGCTTTCCGTCTCAATATCTCCAC 34151 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 15 36 100.0 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAAGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAACTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CTCGTTGAAATAGATGGGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCCACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCATATAAGCGACCAGCTAAAACCCATCTGCTCTTGTGATTACCCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTGTGGATTCTCTCTGTCGAGTGTCAAATCAAAGCAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 7661-6449 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVFT01000103.1 Planktothrix agardhii NIVA-CYA 34 contig00165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 7660 37 94.6 174 ................TG................... AAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGAGATCCTTTTCCCCTAGAACAGAGTGATCT 7449 37 100.0 36 ..................................... CCCCTTGTATTCGTGAGTGCCGATTTATCCGTAACG 7376 37 100.0 35 ..................................... TATGATTTGTTAAAACCTGAGTGTGTAAGTTTTGA 7304 37 100.0 37 ..................................... GACAGATGTACCGTTGGGGTTTGATTGGTCTTATCAG 7230 37 100.0 37 ..................................... TTTGCTCTTGCTATTCCTGCTGGTGCTAGTAGTCTCC 7156 37 100.0 37 ..................................... TTAAGAATAATGAGTTAGTAGACTTAGAAGATAATAG 7082 37 100.0 43 ..................................... ATCGAAAAAGCAGCGACCGCTAGAGTACCAAGAGCCGTGATTG 7002 37 100.0 38 ..................................... AACTTTTAAACTCATCTAAGAGGACTCTCACTTGTTCC 6927 37 100.0 37 ..................................... GGCTGGCGCGTGCTACAACTTCAGCCCCCTATAGTAA 6853 37 100.0 36 ..................................... TGATAGCATTATTTTTGCCTCATTGTGTGCTTACTT 6780 37 100.0 35 ..................................... CAAGGTGTCAACTTGGCAGTATTTCTTTCTCCTTC 6708 37 100.0 42 ..................................... GGAACATTATAAAAAGTTAAGTGTAGATAAGGTATCTGCCAA 6629 37 100.0 35 ..................................... GCAAGTTTTAATGTACTCAGATGATTTCAGTAGCT 6557 37 100.0 35 ..................................... TTAGTGACTCTATAAAGCCTATATCTGGTAATGGT 6485 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 15 37 99.6 47 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTCTTGTAAGGCTAATTCACAGGCGGCATAACCAATATTTCCACAGGCGGGGGCGTTTAAACCTGCGGCTTGAAAAATTGCGGTGGTGAGGGCGGTGGTTGTGGTTTTTCCGTTAGTTCCAGTAATACAAACCCAGGGCAAATGTCGCAGATTTCGCCAGGCTAATTCTAGTTCTCCGATGGTTTCTATACCTAAATTTCTGGCGGCTTTTAACCCCGGACTATCCCAAGGAACCCCAGGACTAACAACTATTAAATCTAGGGAAGTATCGGGTTGAAAATTATGTCCTAACTCGACTTTAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGGAAGAATTGCGATCGCTTAAAATCACATCCCATCTTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATAT # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATACCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCTCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGTTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTCGGAACTAACTGTA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.96, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA //