Array 1 29945-35337 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWXU01000038.1 Arenimonas composti TR7-09 = DSM 18010 strain TR7-09 contig41_scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29945 29 100.0 33 ............................. CTCGCGATGGACATGCTGCGCGACATCCGCGAC 30007 29 100.0 32 ............................. GACGACGACACGGACGGGATGGCGTGACGACC 30068 29 100.0 32 ............................. GCCGCGGCGTGGAACCGCGCGTTCGGACGATT 30129 29 100.0 32 ............................. AAAGAGGAGGCCGAAAAGGCAGCGAAGAAGGC 30190 29 100.0 32 ............................. CTCGACCCGACGCTGGAGTTCCAGCGCGTCGG 30251 29 100.0 32 ............................. GTGCACACCTTCGTCACCCAGACCATCGGCGA 30312 29 100.0 32 ............................. CCGGTCGGGCCGCTGGTGATCGGCTTCGACCC 30373 29 100.0 32 ............................. ACGAAGTTCGCCACCTCGCCTTCGTTCTGGCG 30434 29 100.0 32 ............................. ATCGGCCCCACGCCAACCGGGTATTTCGTACT 30495 29 100.0 32 ............................. CGTCCGCCTGGAGCGCGTCGTCGTCCGGGATC 30556 29 100.0 32 ............................. CCGATCGTGGATGTAGGCCTGCGCCCGGTTGA 30617 29 100.0 32 ............................. GCTGGAGCCTCGCCATTCGGCCAGACCCGCGA 30678 29 100.0 32 ............................. GGCGGCGCAGTCGTGGTCAGCATCACGGGAGC 30739 29 100.0 32 ............................. ACCACGAGGAACGCCTGCGCGTCCTCGAGCGC 30800 29 100.0 32 ............................. GCGGCGCAGGACCCGAACGCTACCGCACTGAT 30861 29 100.0 32 ............................. CAGCTCGTGGGCATGGGCCTGTTGGAGCCTGG 30922 29 100.0 32 ............................. ACTGACAGGAGACCCTGATGACCGTCCCCACC 30983 29 100.0 32 ............................. TCGCTTCGTGTTGTTGCTGAGTTGGTAGAGGC 31044 29 100.0 32 ............................. CGGTCGACGATCGCGGCCTCGACGCCTTCCTC 31105 29 100.0 32 ............................. TGACCCTCGCCGCCAGCCAGGGCGACCTGGTG 31166 29 100.0 32 ............................. TCCCGCACGGTGACGGTTCGCAGCAGGCGGAC 31227 29 100.0 32 ............................. ATGAGCAACGACACGGCGTGGGGCATCATCGC 31288 29 100.0 32 ............................. CGTGTCAGCGGCTGGAAATTACCGTCACGGAA 31349 29 100.0 32 ............................. CTGGTGTCGGTGGTGTCGAAGGTCTCGGTCAC 31410 29 100.0 32 ............................. CTGCAGGCGCGCATCAACGACCTGCAGGCCAA 31471 29 100.0 32 ............................. ACGCGCTCGGCGTGCGCGTACGGCGTCCGGAT 31532 29 100.0 32 ............................. AGAGCGAAGCGAAGTAATCCGGGCAGGAACAC 31593 29 100.0 32 ............................. GTGTCGTTCGGCGACGGCGATAGCGGGTGGTA 31654 29 100.0 32 ............................. CAGTTCTGGACCGACGAGCGGTGGATTCGCGT 31715 29 100.0 32 ............................. TCGGTGCCTTCGCGTCAGGAAGCCCCACAGAG 31776 29 100.0 32 ............................. TCCCGAGTCCCACGACGGAAGCTCCTCCGCCG 31837 29 100.0 33 ............................. ACCCGACTGATGCTGGGAAGCCAGCGTGCCGCC 31899 29 100.0 32 ............................. GCGGGGCCGAATCGCACGATGCTCAACGAGGT 31960 29 100.0 32 ............................. TCTTCACCCCGGGAGAGCTGGCCAGCATGGAG 32021 29 100.0 32 ............................. CAAACCGAACCATTCCGGGCTCGCCTGACTTG 32082 29 100.0 32 ............................. CCACCCCGCCGACGGAGTTCGGACAGTGGCAG 32143 29 100.0 32 ............................. CACTTCTTCCGGGTGCGAAACTGGCTGCACTA 32204 29 100.0 32 ............................. TCGTCGCCGTACGTCAGTTCGGTCGTCGTGTC 32265 29 100.0 32 ............................. ACGCTCGGCGAGCTGTGCGAACTGCTGCAGGA 32326 29 100.0 32 ............................. TCCCCGAGGCAGAGCGCGCCACCTACGACGTC 32387 29 100.0 32 ............................. ACGTACAAGGGCAAGGAAGGCAAGGCCGACCG 32448 29 100.0 32 ............................. CGGCTCGGGGAGATCCTCGTCGACGCGATCCC 32509 29 100.0 32 ............................. CCGGAAGCGGTACTGAAGGCCCGCAAGGGTGA 32570 29 100.0 32 ............................. GATCTCTTCCTGCGTGCGGCCGGCCATCAGCG 32631 29 100.0 32 ............................. GCCGAGTCCGACCGGCTGAAGCTGGTGTCGGT 32692 29 100.0 32 ............................. TCGCTCGGCGCGCTGCGACTCGCGGCGCAGCA 32753 29 100.0 32 ............................. TCCATCGGCACACCGGTCATGACCTGATTTTC 32814 29 100.0 32 ............................. GGCGTGGTGCCGTAGACGATGCGATCATGCAG 32875 29 100.0 32 ............................. GTCGGCACGGCGGGCACCAAGGGTGTCGGGCG 32936 29 100.0 32 ............................. CTGCGCGAGATCGCGGAGCTGCAGGGCACGGA 32997 29 100.0 32 ............................. GGCGCTGCCAGCCCAGATGAACGGCCAACTCG 33058 29 100.0 32 ............................. CGTGCGGCAGCGGTACCGGACGGTGCCGGCGT 33119 29 100.0 32 ............................. TGCGTGCCGATGTTCATGCGAGTGTTCCCCTT 33180 29 100.0 32 ............................. GCGACCCCGAAGATGGTGGAGGGGTTGGAGAC 33241 29 100.0 32 ............................. CACGCTCAGGCGCTCGTGAAGTACGCGCTAGA 33302 29 100.0 32 ............................. ATCGTGGCCTTCAGCCACTTGATCCCGACCGC 33363 29 100.0 32 ............................. GCTTGCGACGACGGCCGTTCTCGCCTTCGCGA 33424 29 100.0 32 ............................. TCTGGTTCGCCGTCAGCGTGCCCAGCGTGAGG 33485 29 100.0 32 ............................. CCCGAGTCGCCGCGCGCGTACTGGCGGTCCTA 33546 29 100.0 33 ............................. CCTGCGCAGCCTCGAGGAGAACAGCGCGCTGCA 33608 29 100.0 32 ............................. GTCGAGACCGTCGTGCCACAGCGGCACCTGGT 33669 29 100.0 32 ............................. GCTGGTCGCTGTATAGCGCGATCCTCAACACC 33730 29 100.0 32 ............................. GTGGTCGAGCGGGGGAACGCCCTCCTGGTCAC 33791 29 96.6 32 ...................A......... CCTGTGGAACGGTGTCGCAGCAGCCGCGGGCG 33852 29 100.0 32 ............................. ACGCCCTCGACCGCGACGCTGCCGGTGGCGCC 33913 29 100.0 32 ............................. GCGAGCTGGCAGGAGCGCACCGCGCCCTCGCC 33974 29 100.0 33 ............................. GAGCACGGCAGCCAGCGCAAGGCCGCCGAGGCG 34036 29 100.0 32 ............................. GCAAGAAGAGCGCCCGCGAGCACCAGATGGGC 34097 29 100.0 32 ............................. CGAGCGGAGAGAGGCGCGCAGCGCCCTCCGCC 34158 29 96.6 32 ...C......................... TGGCTGCAGGAGAAGCGGGAGCGGGAGCGCGA 34219 29 100.0 32 ............................. TCATGCGCGCAGGACTGGCTGCGGCGGCTGGT 34280 29 100.0 32 ............................. CGGTCGATCACCGGCCGGCTCACAGCGCACCG 34341 29 100.0 32 ............................. TCCGATTTCGGCGTCCACAAGATCGTGCCCAA 34402 29 100.0 32 ............................. TGGGTGGCGAGCAAGCTGAAGCCGAAGAAGTA 34463 29 100.0 32 ............................. GCCAGCGCGACGATGCACCGGTTCGTGTCGCT 34524 29 100.0 32 ............................. TGTCATCGGCAGTCACGCCCGAGGGCAGGGAG 34585 29 100.0 32 ............................. TACCAGGACCCGGCCGAACTGGCCGCCTAACA 34646 29 100.0 32 ............................. GCGTTGGCGGCGGCGGCGCGCGCCGTGTCCTG 34707 29 100.0 32 ............................. AACGGTGGTCATGTCGTCTCTCCGGGATCAGG 34768 29 96.6 32 ..........................T.. TGGTGGTAGCGGCGCACGCACCAGGCGCGGCC 34829 29 93.1 32 ....C.....................T.. AATGGCGGCAGCGGCCAGCCGAACTCCGGCAT 34890 29 96.6 32 .................T........... TGGAACGAGCAGCTCGCCACCTGGCACGACTT 34951 29 100.0 32 ............................. GCCGCCGGCAGGATTCGGGTCACCATGCGGAG 35012 29 89.7 32 ......G..........A.A......... GTCTGGCTCGTGCCGATCGCGATCGTCGTCGG 35073 29 75.9 24 .....................TCCGG.AA GGACTTCACGATGCACACGCAGGG Deletion [35126] 35126 29 89.7 32 ............G...T....G....... CCTCGCGCCGGCGCCTCCACCAGGTCGCGCAG 35187 29 89.7 32 ...........TG....T........... GTCGTTAGCGTCGTCCACGTCCACCGCTTCCG 35248 29 89.7 33 ...G........G......A......... TGCGCAGCGATGTCGGCGATGCTGCGGCCGTTC 35310 28 82.8 0 ......T......C.....C.-C...... | ========== ====== ====== ====== ============================= ================================= ================== 89 29 98.8 32 GTGTTCCCCGCGAGCGCGGGGATGATCCG # Left flank : GGCGGATCATCCCGGCGATCGAAGACGTGCTCTCCGCCGGAGGTATCGACCCGCCGGAAGCGCCACCGGAATCCGTGCCACCGGCGATTCCCAATCCGGAGGCGATCGGGGAGGGCGGCCACCGGGTGCAGGGATGACGTTCCTGGTCGTCGTCACCGAGAACGTTCCACCCCGCCTGCGTGGCCGGCTGGCGCTTTGGCTGCTCGAGATCCGCGCCGGGGTCTACATCGGTGACGTCTCGAGGCGCACGCGCGAAATGATCTGGCAGCAGGTGTCTGAAGGCTGCGAGGAAGGCAATGCCGTCATGGCCTGGGCGAGTACCCACGAATCCGGTTACGAGTTCCAGACCGTAGGTCGCAACCGGCGCGTCCCGGTCGACTTCGATGGGCTCCGCCTGGTCGCATTCCAGCCGCCCGACGACGGCGCTCTTTGACAACCTGTGATTCGGTAGAATTTCCGGTGCGCGGTTTTACGCGTTGGAACAATGGTTTGCGTGAAGT # Right flank : GCCCCCGAAGCAGCGGACGAACGCCAGGTAGCAATGATTCATGTGAGTGCGCACGTGACTCGGCTGCCTCGGCTCTCGGAGCGCAGTGGCTGGTTTCCCGACGCGAACGGATTGGCTTTCACGTTCACCGCGTGCAGTCCATCGTGTTCACGTTTCTACGCCACAGCTGGCAGCGAGTTGCGATCTCCTCCGTCTGCTGCTGAGCTTTATCGACTACGCCGGCGATCGACTGTCGGCGGTGCAAGGAACGCGCGATATGCTGCGCTTTTGCTGCTCGAGTGCGACCAGGTCACCGCCGGGGAGCCGGTGGACAACGATGAACGACCAAGGGTTGATACTGGTTCCGGTCGTTGACGATGCGTCTCCCAGACCGAGGTGGACCAATGGCGAAACGGAAATCCCGCGACCCGATCACCTTCACCGCCGTGCTGCGACGCCCGGCCGAACCCGAACACGCCGACTGGGCATTCCTGCGCCTGCCCGCCGCGGCCAGCGAGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //