Array 1 307271-310526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDX010000001.1 Lachnoclostridium pacaense strain DFI.6.51A IPBPEBFD_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 307271 32 100.0 33 ................................ CTTGATTTCCCGTTTCACGTCCTGGATCTCAGC 307336 32 100.0 34 ................................ TTCGAATACCAGTCCTATATGCCAATAGGATCAT 307402 32 100.0 33 ................................ CTCATACGGTTTTGAATGTAACTGTCATCCCTG 307467 32 100.0 34 ................................ TAAACACAGGATAAGGAGGGTGGGAGGCGGCAGG 307533 32 100.0 34 ................................ CGGCGTAATCAGGTAGTGGTCATCAATGCTCTTG 307599 32 100.0 33 ................................ CAATGTATTTGCTGATTCCCGTGACTTCTCTCA 307664 32 100.0 34 ................................ AAACGGGTAGGGGTAGACATCAGGAAGGATGACG 307730 32 100.0 34 ................................ GCCATAGTGACCAGTACAGCACAGGAAAACATAG 307796 32 100.0 34 ................................ CCATGATTATTATGACCGATGCACTGGTAGGAAC 307862 32 100.0 34 ................................ CTGGCCGGTGCGATACAGGCGCAGCAGAGGGAAA 307928 32 100.0 34 ................................ ATCCAGGTGGTCGATACCAACCCGCTCCGTAGCC 307994 32 100.0 33 ................................ GTATCCGGTCAGCATGTAGCCCTCGCTGTCAAA 308059 32 100.0 34 ................................ AAATGCCATTGATTCTCACCTCTTTCCCGGCACA 308125 32 100.0 33 ................................ CCCTTTGAACTTCAGGATATATTCACCGGATTC 308190 32 100.0 34 ................................ TGAGCTGCGCATCCCGTGTAGTCCCTGCGCTTTT 308256 32 100.0 33 ................................ CGGGGAATGGATACACAAAGTGGCCGCACAGGA 308321 32 100.0 34 ................................ CCGCGTGAACAGCTTAACCGAATAGGTCTCGCCC 308387 32 100.0 33 ................................ GATGGATGCACCAAAGGAAGCATCCAGAACTAT 308452 32 100.0 36 ................................ TTTTATCATCCAAGGTTCCTTTGTGTCCGTTGCGGC 308520 32 100.0 33 ................................ TTTATTACTCCGCCAGCCCAGGCCTTGTCCAAC 308585 32 100.0 32 ................................ ATCCGCCCCACCCTGGTATTCTTCCTCGCTGA 308649 32 100.0 33 ................................ GTAACATACCTGTTCAGGCTTCAGCAGCTTCCT 308714 32 100.0 34 ................................ TGAGGATGAAGAGTATGAGGAAATACCGAAGTGG 308780 32 100.0 34 ................................ GGGAAAATGCCAGGAGCATAGAGAGCATTCCTAA 308846 32 100.0 35 ................................ CCAGTAAATCCGGACGCCCGGAAAAGTCAGTCACC 308913 32 100.0 33 ................................ GAAGACATAAGGAAATTGAATAGGGCAATCATA 308978 32 100.0 34 ................................ GTACATCCAGGGAATGCTGCCGAAGTACTTGACC 309044 32 100.0 35 ................................ TATAATAACCAAAGTAGTCAAATCGCGTATACCTC 309111 32 100.0 33 ................................ CGGTCACGAAACTGTTTGGACGTTCACCAGCTG 309176 32 100.0 34 ................................ CGGTTGAAAGCAAATCACGCAAACGAGAAGTTGA 309242 32 100.0 33 ................................ CCGGAAGATGTCACATATCCTGGGGTGGAACGG 309307 32 100.0 33 ................................ GGACAAAATTGTTGGATGGATCCGGAACTTGGT 309372 32 100.0 34 ................................ GATTTACAGAGGTCCAGAAGAGCCAGGAGTAAGT 309438 32 100.0 34 ................................ ACGCTTATGCGGTCCTATCAAGGAACCATGGCAG 309504 32 100.0 33 ................................ ACAAAAAATCTGGTGGATGTGGTGGTTGAAAGA 309569 32 100.0 34 ................................ TACAATCCCACGGATTGCACAGGTGGATAATGCC 309635 32 100.0 35 ................................ GTAATAGTTATAGTTCCGGCCTGGAAATCCGCATT 309702 32 100.0 35 ................................ AATTTAATGCCGTCCGGAACGGCAAGATTGTATAA 309769 32 100.0 35 ................................ CCCTGGGAAATGCCATACCAAATACAGGCCATCAT 309836 32 100.0 34 ................................ AGAACATGGATATAGCGACAACCTGACCCTTGAC 309902 32 100.0 33 ................................ ATTCCATGTGGGTTTTGGCAGTAACCTGAGAGT 309967 32 100.0 34 ................................ CAGCAATGATGATGCACAGGCCAGCATCGTGTTC 310033 32 100.0 34 ................................ ATAGAACAATAAAAGCCTCTGCGCCACCAACGCA 310099 32 100.0 33 ................................ GATAATATATTAAAGGACACCTGATTACTCAGA 310164 32 100.0 34 ................................ ATCCCAGGCACCGGGGAAGACTGCAGCCGGGTGT 310230 32 100.0 34 ................................ TATCTGCAGGGGAGGGAGCGTGGCAGCAGACCTG 310296 32 100.0 34 ................................ TTGTCATATCATACAGGTATGCGGAAAGAGGAGA 310362 32 100.0 35 ................................ GACAACATATATGCAACCCGTGAAGAGGCGGAAAC 310429 32 100.0 34 ................................ AAAGTCTTTGAAGAGGCCGTACCGAAATGAATTA 310495 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 50 32 100.0 34 GTCACGCCTTGCGAGGGCGTGGGAGTAGAAAT # Left flank : GGGGATATTACAGAGTATCCGTGCTATTTGATGAAGTAGGTGGTTATATGATGGTGATTATTAGTTATGATGTCAGCACAGTCGATAAATCAGGGCAGACACGGCTGAGAAAGGTGGCAAAGGAATGTCAAAATCATGCACAGCGGGTACAGAACTCAGTATTTGAAGCAGATTTGGATTATTCTACCTTTCTGAAATTAAAAGATGCATTAATCCGGCTGATTGATGAGGAGAAGGACAGCCTGCGATTTTATTATCTTGGAAACAACTGGAGCAGGAGAGTGGAACATGTAGGAGCAAAACGCGGTTATAATCCAGAGGGGGTTATTATTATTTGAAGTAAGGCGAAGATGTGGTGATACGAAAATAGGTGGGAGGTTCGCCTGAAAAATAGTGTTTACTTTGGGATTTTCCTTGCATGGCAGAGGGAAAATGTATTAAAATAATAAAGTCCGCCCCGTATTTAGTGGTGATGACGGCAGGGAATACTATTTGTTGCT # Right flank : TGTAATGCGTTGTAGAGGGTAAGACAGGGGTTATGTCGTAAGCGCCAAGTATTAGGGTGGCTGGCGCTTTACTACCAAATGATCCATAATAGTAGATAGCTAGATGCAAGCATTTTACTCTGGAATACAATGTATCCCATTGTCAGATGTGAGCACTTCACTACATATTTATGGAGGTGTTAAAAAATGTCCAGTTACAATGCCCGAGTACCGGCTGACAAGCAATACCAGCTAATCATGGAATGCAGGGGCAGCGGTCTCACTGATTTTCAGTGGTGTAAGGAACATGGGATCCGTCCCGGGACCTTTTACAACTGGGTCAGCAGACTCAGAAAGAAAGCCTGCTGTGAAATTCCTGAATCCATTTCCAAGGCAGAACCAGCACCATCGCCAGCGCAGGATGTGGTCCGTTTAAATTTCAATCCAAAGGAAGAACGGACGGAACCGATGTTTCCAGTCCAGTCCGTGTTAGAGGGTCCATCCAGAATCCCAGAAATATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGAGGGCGTGGGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 108059-107891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDX010000007.1 Lachnoclostridium pacaense strain DFI.6.51A IPBPEBFD_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 108058 33 100.0 35 ................................. ACCCGGGTGAGGGATAAAGCCTATGAGGCACATGA 107990 33 100.0 34 ................................. TTATCATTCAATGCTTCCCACTGGTCGCTATATC 107923 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 35 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : AGATGGGGACAATGAAAATGATATCCTTTTTATATAATGCTGTACTGAGGGAATGGAAGAAGATGGTTATAATGGGTTTAGAAGGTAATGTGGAAAATGCAGGATAAGGGAATTTGATTGCAGCAGGAGTGGGGGATTGTTGACTACATCAGTTTTTGGAGTGAATTAAGATGGTGAGTTGTGAGAATCGTAGGAATCTACTTATTTTTTAAAGCTAGCTTGGTTTTCTTTGAAATCAGATTAGCTTTTCTTTTGTGGAAAAATTTTGTATAATGTTATACAAAAAGGAGTGTGTGCAGGAGTGGATGCAGAGGGTATGAATGTCAGGAAGCAGGTGATGGTGCGAATTATGAGTGCACATAAAATTCCTGGGGGATTCGCACCAATAAGGCAGGGCGGAAATTGAGGTTTTCTTAAAAAAAGAGAAGTTGTAAGAGGAATGTTATGCATTGTATATAATAATGTTTGTTGGAATTTTGTTTATGTTGGGTATTATTGCA # Right flank : CTGTAAAATTAATGTTTTGTGATTATATTCCAAATTTTTTTGATAGCAGCACAGCCCGAATAGATGGCAAGAGCCGTGATGTTACCCATGAATGCTATTAAAAAATATGCACAATACAAAAATGATATTACTGATATGTAGTTAAAAAGCCCATCTTTTGCGGTACTATCAAGAATCGCCAAGGGAATACATAAAAACGAACATACAAAACAATAAGAAAAAGGAGATTTCCTTTTGCGTAGACCATAAACAAAAGAAATCAAGAAGCAGCCTAATGGAATATAACCAAAAAACAGCGCCTCCTCATAAGCAAAAATATCGGCATCTACAAAGATATATTTTAAAATCATATAACCCGTTACGGGTAAAACATAAAGGTTTAGAAGATGTGATAATAAATACCATTTCATATTTTTACCTCCTGATTTTATCTATATTGTATCATTTTATGTATTAATAAGTTAGGTGTCAAATGTCATTTAGAATATGACATTTGTAAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 118485-114892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFDX010000007.1 Lachnoclostridium pacaense strain DFI.6.51A IPBPEBFD_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 118484 33 100.0 33 ................................. TCAAGTTCATCCATGTCAGCCCCAAGGTTATCC 118418 33 100.0 33 ................................. AATGTAGATGATTCTGGGAATATCGAACAGACC 118352 33 100.0 35 ................................. AATGCACTCTGTTGCTGTTTTATCAAATCTTAATC 118284 33 100.0 34 ................................. GTATTAGTTAATGTATCTGTCTTGATGACCATCT 118217 33 100.0 34 ................................. CTGTCCAGATTAGGCTATTTAATTCAGGGAGATA 118150 33 100.0 35 ................................. GTCCAGAAGCAACCGTCCAGTAACTCCTCTGGATA 118082 33 100.0 35 ................................. TGTAGGTAACAAGGAAAGCGTAAGTTTGGCAGGCA 118014 33 100.0 34 ................................. CCCCTTTCCGTCCTCCCGTGCCAGCATCAGATGG 117947 33 100.0 35 ................................. ATCACATATTAGATAATTATATTAAGAATTATGAA 117879 33 100.0 35 ................................. CTGGATTGCTGCTCCAATTCCCGCGATTGTGCCTA 117811 33 100.0 35 ................................. TCTGTCTTTTGCGCACTTGTTCTCGGCATCTTTTG 117743 33 100.0 35 ................................. CGAAAAGCTACGGACCAGTTCGCCGATGGCGGAGC 117675 33 100.0 35 ................................. CCACGTAGACCAACAAATCTGTTAAAAACCTCTGA 117607 33 100.0 33 ................................. AGTAAGAATTTTGAACTGTCCATTTGTGTATAT 117541 33 100.0 34 ................................. TTAGCCAGATGACAGGCGGGAAGCTTGGAGTAAG 117474 33 100.0 36 ................................. ATGTGGTGGGGTGGCCGCAAGGCAGTCCGTACCCTT 117405 33 100.0 33 ................................. CATCCCAGCCACTCACGCCCCTCGGCGATTGCG 117339 33 100.0 34 ................................. CGGATGGGGTGGGCGCTGCCTAACCCGGCAACCA 117272 33 100.0 34 ................................. TTTGCGGCCCTGCGTATGAGCATCGGCGCCAGTT 117205 33 100.0 36 ................................. TCGGTATGTGAGTACACCAGGCACCGCCATGACCCT 117136 33 100.0 35 ................................. AACCAGTCAATGCGACCGGAGGACATAAAAAAGAA 117068 33 100.0 34 ................................. CCTATTGATTTACTATTGGAGGTCATTGATATTT 117001 33 100.0 35 ................................. TCTGTCTTTTGCGCACTTGTTCTCGGCATCTTTTG 116933 33 100.0 33 ................................. TGCATCCGAAATCTCCCATGCCTTTTCCTCATA 116867 33 100.0 35 ................................. AACCCTGACGGATATGCCCTCACAGACTGGCACCA 116799 33 100.0 35 ................................. CATCAATGGTAAGAGCATGGTTTCTTGGCAGTCAT 116731 33 100.0 35 ................................. CAATCGCTCCAATTACTCCAGTATTTGCTATACGT 116663 33 100.0 36 ................................. CTTTGTGTAGACGGGATAAACTATGAAATCCGTGAG 116594 33 100.0 35 ................................. TCCTCGCCTGAGTGGTCCAAAGGCTGCTAACAATA 116526 33 100.0 33 ................................. CCTTTATCATCCTTCAGTGTGTCAAGCCATTGG 116460 33 100.0 34 ................................. GTATGGTGGGCGTCCTATTTATTTGACATACAAT 116393 33 100.0 35 ................................. TGTGTAACATCTATATGATTACAACTGATTACATT 116325 33 100.0 33 ................................. AACATCCTGGACAAGGAGATGCAATGGATTGGT 116259 33 100.0 33 ................................. TGATTGTCCTATCATAGATACTCTTATAATGCC 116193 33 100.0 33 ................................. ATCACCGCCGACCATGATGATACCGTCCCTCCT 116127 33 100.0 35 ................................. CCTCATGCTCCTCCAGAACGATTTTAAAACCATGG 116059 33 100.0 34 ................................. TTTATGATTTCATCAATGCACGAATCAGCATATG 115992 33 97.0 34 ............T.................... AGTCAGTCAAGAATATTGAGGACGGTGCAACGTT 115925 33 97.0 35 ............T.................... AAGATATGCAACCTCCCACTCTTGCCAGGACTACC 115857 33 100.0 35 ................................. ATATCCTGTCAACCAATAAAATAATCATTTTTAGT 115789 33 100.0 33 ................................. CTGTTGCCCTTGCGGTCATATTCCAGATTATAA 115723 33 100.0 33 ................................. CACTATGTTGTTAAGTTCATCCCAGAGGGAAGT 115657 33 100.0 35 ................................. CGCATCTTCGGGTCCAGGTCCCCTGTATACTGCAG 115589 33 100.0 34 ................................. TTAAGGTAGACTTGGCAACTGGCAACGCATATCC 115522 33 100.0 33 ................................. AAGCCAATCTGGAAAACAATATGATATTACATA 115456 33 100.0 34 ................................. TATATGTCAATGCTGTGTTTGTGACATCTGGCTT 115389 33 100.0 33 ................................. TGCAGAAAAGGTTCGGAAAAACCTTCCGACCCT 115323 33 100.0 33 ................................. AGATGTATCAGAGAAGGCCGGAAGCGCTATCTG 115257 33 100.0 34 ................................. TTACACACCATATCTGCCTGACTGTCTGTCAAAT 115190 33 100.0 34 ................................. TGTATGTAAAGAGTGAAAATAGCAATTTAGATGA 115123 33 100.0 34 ................................. TGAATTTTACGCAGCTCCATATGATGGGGAGGAC 115056 33 100.0 33 ................................. TTATTTGACAGCTTGCAATGATATGCAAAATAT 114990 33 100.0 33 ................................. TACCGTGTGCACTTGAAGTAGATACAAGTTATA 114924 33 84.8 0 ..............A.A......A..C.T.... | ========== ====== ====== ====== ================================= ==================================== ================== 54 33 99.6 34 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : ATGGCCTGTGGTTCTACCTGGGGGCAGATGGAGCCATGCTCACAAATACTACTACGCCGGATGGGTTCAGGGTGGATGAGAGCGGGGCCTGTGTGCAGTAAACATTTTAGACTTTTTATATGGTGTTCGATATAAGAACCCTGAAAGGCATGGCGTATGATTCGTCATGCCTTTTCTTTTAATGGGTTTTCATGTATAATGATATGAAAGAAAGTAAATGCATATGAATAAATATAGTATGATGGTATATAAAAACGGTATTATCGTAATTGAGAATAGATAAATGGTGGGTGATAGAAGAGGGGAGAGTATATATTACTGTGAAATATAAAATCTCGGTGCGGATCATAAGTGCACATTAAAATACTGGGAGGTTCGCACTGAAAAAGATACTGGGAAAGGTAGAGATGTTGGTTTGGGTGTAGGGTTGATAAGCAATTAGTGTATATTATGTACAAATTAGTATTGTTTATATGTAGGTGATTTTGGGTATGATTGCT # Right flank : TACAAAGTCTCCATAACAAATTTTAGTACAAAACTTACATTCCACAAAAGCCATACGCATTGAAACACTCACTGGTTATTCCAGCAATAAATATACATTGACAATTACATATTGATAGTCAATCGATTTTGAGGTATTCTGATATACAGGAATGCAGGAAATTGAAACAATGTATTGTAGTAGAAAGGAGCTTATATGGTAAAACTGGACGGATTCATGGCACTACTGACTGGGAGTTTCAATAATAGGGAACAGTATGATACATTGCGGAAAGCGGAAAATGGTTTTCCCTATGCGGAGCACATCAATACGGTCTGCAATGATAAAATCAGCAATATACCACCAGAATTTCAGGGGAAATTCATGGTGGAGGAGAGCATTTACGAGGTAAACGGAAAACGGCATTCGTCTTCCCATCTGTTCCTGTTTACTGAGCAACCGGAAGGAATTTTGCTGACTTCTTATGATATCCCGGAGGGGAATGACAAAACGGTGTTTTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //