Array 1 226551-228470 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMJ01000001.1 Parabacteroides sp. AF19-14 AF19-14.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 226551 33 90.9 35 ..............................TGT CCAAGGTTACCCGTAATGGGGTGGAGGATGTGGAA 226619 33 90.9 35 ..............................TGC GGGTATATCAGTGAGCGTTTCGTGGATGTGGGCGG 226687 33 97.0 34 ................................C TCAAGGATTGTCCATCCTCCAGCCTCAACGTGTC 226754 33 100.0 35 ................................. TAATTCCCAATTTATACAATATGTTGATTATCAGA 226822 33 97.0 34 ................................G AGAACCCGGTGGACCGGGTGGACGAGCGGACGAG 226889 33 100.0 35 ................................. CCGCCGGAAGGGATGACAACCATCCACCACCGTAT 226957 33 100.0 34 ................................. TGGAGAGGAACTATATCGAGAAAAATTATTACAC 227024 33 100.0 35 ................................. TCTTGGAGTCCGACACGCTGGATTTCTTGAGGGCA 227092 33 97.0 34 ................................T TTGAGATTATATATTTGTGTCAAACAACAGTCTG 227159 33 97.0 34 ................................C ATGATACCTACCGGTTCATCCCCGCCCTTAAACA 227226 33 97.0 34 ................................T TTTTTGCTTGGTAACTATAAACTCATCGAAGCAT 227293 33 97.0 36 ................................T TCTGTAAAGGTTGCCTCATCGTATATCTCCGTGGAA 227362 33 100.0 32 ................................. AATCGGGGATCTTTGAATAGATTTTCAAGATC 227427 33 100.0 34 ................................. GCCGCACGATCAAGGCGTGCGTCCAATGTTAGAT 227494 33 97.0 34 ................................T CAATCTCTCTGTTATTTCCATGTTACTCTATATC 227561 33 100.0 34 ................................. GTTCTCATGGGCTAATGATGTAACAGAGCCATTT 227628 33 97.0 35 ................................T CAATTCCTATACAGTGGGAGTGATCCTATATCGCA 227696 33 100.0 35 ................................. CGGATAAGGATGGGGATGTCATAATACAGGAGGGA 227764 33 100.0 33 ................................. ACCGGATTACTGGGTGTATGATATGCCCGGTCG 227830 33 97.0 34 ................................T TATGTACGGAGATCGCTAAACCAGAATATCTATT 227897 33 100.0 35 ................................. TGATGTTCGTAGCAGATGAGAATGGCAATTACGAT 227965 33 97.0 35 ................................T CCCCGTTTGTAGTGGGGTAATCCGTAATGGTAACG 228033 33 97.0 36 ................................C CTATAAGGGATAATGATCTTAGTGTTGTATCTTTGG 228102 33 100.0 33 ................................. CCAGTTTTTTTACCGATAACAGCGTTTTCGTCA 228168 33 97.0 35 ................................C GAACAACTCATTAAACAGATTGGCAATTTGAGCAA 228236 33 97.0 35 ................................C CGACGTACATTATTTACGGCGACACGTTCCGGATT 228304 33 97.0 33 ................................T CAGAGTCGGGTATGATCAAGTCTTGATAAGCGG 228370 33 100.0 35 ................................. ATTGAGCCGGTAATCCGTTAGCCCCGTTGTTGCCG 228438 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 29 33 97.9 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Left flank : GATAATTATCCGGTATTTCTAATAAAATGATTTACGATTATGCATATTCTTGTGACTTATGATGTGGATACTACGAGCAAAGAAGGAGCTCGCCGCCTACGACATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGCGTATTATTGATATGTCTCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTAGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTCTTTAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTATACAGGG # Right flank : ATTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGGGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACTCTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCAACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAACGGTGATAAACAGGAGATGTATGAGACATTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACATCGCCGCAGCACTCAAGCAGACTTTCGGTTTCTTTTGGGTAGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGTACACGAATCAAATACGGAAAAGGGGTCTGCGGCACGGCCTGGAAGGAGACCCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 308445-308706 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMJ01000005.1 Parabacteroides sp. AF19-14 AF19-14.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 308445 47 63.8 29 AGGT.A.G.AT..A.....A...........C..C.CAA......GT CTTGGGGCGAATGGTGACGGTTGGCTTGT 308521 47 100.0 30 ............................................... TATATTTGGTAAATGGTCTATCAATAAGGT 308598 47 91.5 30 ...........C...CG.................C............ ATCAATTTTCAATTACCTATGTCTAATATC 308675 32 63.8 0 ...........C...C................--------------- | Deletion [308707] ========== ====== ====== ====== =============================================== ============================== ================== 4 47 79.8 30 GTTGTGATTTGTTTTTAAATTAGTATCTTTGATCTATTGGAAACATC # Left flank : CCCGTGGGGGATTCGCCTGGGGCTGTCGTACAAGCAGGTTCAAGAGAATGCGTCGCTTTCCGGAGTGCTTACAGTTAAGCACCTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCCTAGTTCGCTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGACTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAGA # Right flank : TCCATT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:3, 3:0, 4:-0.01, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGTTTTTAAATTAGTATCTTTGATCTATTGGAAACATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 654-69 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMJ01000063.1 Parabacteroides sp. AF19-14 AF19-14.Scaf63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 653 47 100.0 30 ............................................... CTATGCGTGCTTGACCTAATGCAGAAGATG 576 47 100.0 30 ............................................... GTAAGAAACCTAATGAAATAAGAGCATGTT 499 47 100.0 30 ............................................... GCATCATCATTATATCCCTTCTCATCTCCA 422 47 100.0 30 ............................................... AGCGCAGCTAGCAGGGGACGCTTGGGGGGC 345 47 100.0 30 ............................................... TGAGTCTGCTGTGCGGCTCTTTACCCTGAC 268 47 100.0 29 ............................................... AAGCTAGGTTGGAATGGTCAACGCTTCAT 192 47 100.0 30 ............................................... TATTCTTTGACAATATTAATTTTGATTCCA 115 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACATC # Left flank : CTTTCAAATTAGTATCTTTGATCCATTGGAAACATCATCGTTGAAAGAGATCAACGAGGGTCTAT # Right flank : CCGATGAGGGCAAGAATGTCTCTCTTGATCTGTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //