Array 1 568062-566571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMM02000017.1 Leptospira inadai serovar Lyme str. 10 ctg1134736007936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 568061 30 100.0 36 .............................. AAAATTCATTATACCGAAGCAAATCAAAGTCTGTAT 567995 30 100.0 35 .............................. AATATAGCGGCAGGATTACTATTTGGGAATAACGT 567930 30 100.0 35 .............................. ATCGAGGGCGGCCATTTTTGAAGTATCCAGTTTCG 567865 30 100.0 36 .............................. TATTATTCCCAGGGGTTGAATTAACTATTACATCCC 567799 30 100.0 35 .............................. TGACATTTCCATGCTCAGGACAAAGACAAAAAGCA 567734 30 100.0 35 .............................. CTGCAGATATTGACCCATATTTACAAGTCGCTGAA 567669 30 100.0 36 .............................. AGAACCTATCCCCGGATAATCTTGAGTTTGTAAAGG 567603 30 100.0 36 .............................. CAATCTGAACGTGAAGAGAAAGAATTAAAAGTAGAA 567537 30 100.0 35 .............................. CATCCGCGAAACAATCAGCACAACGTGATGCGCCA 567472 30 100.0 36 .............................. TAGATTACAACTATTGTATACGATTCCGGTTAATAT 567406 30 100.0 35 .............................. GCGTCGTCTCCGCGTAGAAACGCTCGGGCCTTAAT 567341 30 100.0 36 .............................. TCGACATCATTTGTTCCATTTTCTGGGAATGCTTCA 567275 30 100.0 36 .............................. ACTAACGGTTGTGAATATGTAATTGGATCTTGATTA 567209 30 100.0 36 .............................. AGTTTTACCGAATGGAGAGATTGCGATGATAAAACC 567143 30 100.0 35 .............................. CAAATATTGAATATGCAGCATCTTCGGGACCCCCG 567078 30 100.0 36 .............................. TTTACTGAACACCAACCAATATTATGATGATCAAAT 567012 30 100.0 36 .............................. GAAATTGCTTTGGAAGAGAATAATCATTATTTTTCA 566946 30 100.0 54 .............................. TATCTATTTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTTGTCAT 566862 30 100.0 36 .............................. GCCGATCAGCGCGGGAACGATTCAGTTTCGTGAGCC 566796 30 100.0 36 .............................. CGGAAAAAGATTCAATGAACTAAGACCATTGATCAA 566730 30 100.0 35 .............................. CTGCTGGAACTTGTCCGCTGGCAATGGCTCTACCG 566665 30 100.0 35 .............................. TTCAAAACTTTAATCTATATTATCGTCTTGGCATG 566600 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 23 30 100.0 36 CTTTTAATCGAACCAATCTGGAATTGAAAC # Left flank : AAAGAAACGATACAGCATAGACAATTGGAAAAGAACGTAAGCTATCGAAGATTGATTCGCCTTGAATGTTACAAGCTCGAAAAGCAGCTGCTTGGTATCGAGCTGTATAAACCGTTTGTATCTTGGTGGTGATTTATGTATGTGATTTTGGTTTATGATGTTAATGCGAAGAGAGTCGGGAAAATGTTAAAGCTCTGCAGAAAATATTTAAACTGGATTCAAAATTCGGTCTTTGAGGGAGAGATTACTCCGGCAAGATTGGAAAAACTAAAAATGGAGGCTAAGAAGATCATGAAATCTGCAGAAGATAGCATAATTTTATTTCTCAGCCGAAATGAAAAATGGCTGGAAAAGGAGATAATCGGAGTTGAAAAAATGCCGATAGACAACATTCTTTAACAATGTCGTCGATCCCCCAGGAAAATTCGGCTACCGGAGATCGACGACTTGCCCACTGCATAGACAGTTTCCAATCAAGGAATACTGAGTGTTTAAGCGGG # Right flank : CTATCTCCTCCGCTTCAAATCAACGCGTTATTTTATCTAACCTAGTTACGTTTTAGGAGACACTTTTTAAGCAATTCTTTCTTCAAATTCCAGTGGACTCACGTATCCTAAAAAGGAGTAAGACCTTTGTCTATTATAAAATACTTCTATATGATCAAAGAATGCAGATGTAGCCTCTTCGATACTATAGAAGACGTTATATTCCATTTCTCTTTTAAGGGAAATGAAGAAAGACTCAGCCACAGCGTTGTCCCAACAATTTCCTTTTCTACTATTGCTTCTCCTGATTTTATTTGATAACAGAAGTCCACGAACTTCACGAGAACAGTAATTAGAACCACGGTCTGAGTGGAAGATTAAACCCTTGCTTGGATTTCTGGATTCGATTGCCTTCTTGAGCGTACTAAGAACAAGTCCGGAATCATTCCTTTTGCTCAGAGACCAACCAACCACTTTTCTCGAATACAAGTCTATGATCACGCAAAGGTAAAACCAACCCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGAACCAATCTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 625714-625117 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMM02000017.1 Leptospira inadai serovar Lyme str. 10 ctg1134736007936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================== ================== 625713 36 100.0 27 .................................... TGGCTCTTTTAAACATATTTCCATTAT 625650 36 100.0 25 .................................... AACTCCATCCGGGGAAAAAGAAACA 625589 36 100.0 26 .................................... AAATACTGGGCAGATCTCTTGAACAT 625527 36 100.0 26 .................................... CGAACATGATTCGATTATTGTAGAAG 625465 36 100.0 26 .................................... ATTATCCGCTCCCGCTTCCGTCTCCG 625403 36 100.0 27 .................................... TCTAGCTGTTACGACTAAATCGTAAGC 625340 36 100.0 27 .................................... AGTTGCATATTTTAATAGAGATTGTAT 625277 36 100.0 27 .................................... ATCTGCGAAAGAATACGATAACTGTGA 625214 36 100.0 26 .................................... GTGATTAACTCATAGGCTTTTCCGGA 625152 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================== ================== 10 36 100.0 26 CTCTAAAGAGAGGAAAGAATTTCTACTTTTGTAGAT # Left flank : GATTACACTCAAAAATATTACAGGGCTTTTATGCGCAATCGACATATAAAAGAATATCCTGTTTTTTTGATTAACGGTGAGGATTAACCATGCTGCTTATTTCTTACGATATCAGTGATACGAAATTGCGAACCCGTTTTGCAAAGTTTTTAAAGAAATTTGGAGAGCGACTTCAATATTCGGTCTTCGAGATTCGCAATAGCGAGCGGGTTCTCATTAATATAGAGACTCAAATTAAGCAATACTTTGAAAAAAAGTTTTCACAAAATGACAGTATCATAATATTTCACATGAGTGCTCATTGTAAAATAACTCGATACGGTTTTGCGAAAAATCAAGAAACAGACCTGCTAATTTTGTAAGCGTTGCAAACCTCCGTCTTCCTGTTTAAAATTGGATGAAAAATACTGTTTATGTCCGAAAAAGTACGAAAAAAACCCCGTTTTCTAATAAATAATGCTGGAAATTACCCCATTTGCGTAGCCTTTATTCGATTACCT # Right flank : GAAATGACATGGATCAAACAAAATGACCTCTAAAGAGAGGAGATACCTAACGTCCAATACCTATACTGCACCGAGCAGCTTCTGTCTAGCGCGAGCGAAGCGAGCGCGTCTGTCCTCAGTCCTCAGTTCATTGAAACAACGGAACAAGTCCATACGCGGACTCGAAAGGTTCCGCTTGTTCTTCGCAGGCCCAAAGTTCTAGGCTTTTGTCATATCCCGCTTTTGCATTTAACGTAAATATAATTTGATTTTTCCTAGATTGGCACTTGATGGATTCGATCAGGCCTTGACGGTTTCGGTTGCAAGCACTTGCAATTCTCAATATACCCGAAAGCTTTAGGACGATCTCTTGCTCTCGATACCCCAAACGTTGGAACTCCCGGTGCTTTACTTTCGGGCCGCTTTTCCGATGATATCTTGCGGTCAGGGCAATGATTTCGATTTCTCCCCAAGTAAATCCCAACATCGCCTCGGAGTTTCGAATCAGATAATAACTATGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAAGAGAGGAAAGAATTTCTACTTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //