Array 1 46625-47615 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDUA01000010.1 Escherichia coli strain EC330_ST681C scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46625 28 100.0 32 ............................ ACCGGGGCTATATTCACCGAACGCCAGCAAAA 46685 28 100.0 32 ............................ GGAAATCTAAAAAAATTTATTGGCGATACAAG 46745 28 100.0 32 ............................ CGAAGCCGTTGCGGATCTTTAACAGCGCCACG 46805 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 46865 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 46925 28 100.0 32 ............................ AGTTTTTTACCCCACACCTCCATTTTCACATT 46985 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 47046 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 47106 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 47166 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 47226 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 47286 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 47346 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 47406 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 47466 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 47526 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 47586 28 85.7 0 ....................A...C.CT | T,C [47606,47610] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56672-57059 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDUA01000010.1 Escherichia coli strain EC330_ST681C scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56672 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 56732 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 56792 28 100.0 32 ............................ TCGTCTATATTTTCAAATTCTTCTCGAACCGC 56852 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 56912 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 56972 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 57032 27 92.9 0 .......................-C... | T [57051] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //