Array 1 7993-5312 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDMR01000012.1 Listeria monocytogenes strain Lm213 contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7992 36 100.0 30 .................................... CAATCCACTGCGCCAACTTAGGATGTTTCT 7926 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7860 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7794 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7728 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7662 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7596 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7530 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7464 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7398 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7332 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7266 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7200 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7134 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7067 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7001 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6935 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6869 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6803 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6737 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6671 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6605 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6539 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6473 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6407 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6341 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6275 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6209 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6143 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6077 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6011 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5945 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5879 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5813 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5747 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5681 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5615 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5548 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5482 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5416 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5350 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5315,5318,5323] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1173991-1172662 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDMR01000014.1 Listeria monocytogenes strain Lm213 contig000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1173990 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1173924 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1173859 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1173795 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1173729 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC TCA [1173715] 1173661 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1173596 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1173531 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1173465 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1173401 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1173336 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1173271 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1173206 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1173143 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1173080 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1173014 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1172951 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1172886 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1172820 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1172755 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1172691 29 93.1 0 .......................C....C | A [1172666] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //