Array 1 88077-88244 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRF01000040.1 Staphylococcus rostri strain DSM 21968 ad82c537-9ccb-4044-81e6-1ba5860873f3_c40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88077 36 100.0 30 .................................... AAAGGGCATTAGACGAAGTAGTTAAACTGT 88143 36 100.0 30 .................................... GGTTAGACGCATCTATTGCTGGAACTACGG 88209 36 91.7 0 .............................C...A.T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC # Left flank : TCAATTATTTGTTAAGAATAAAAACAGATGACTTAATATCTGGCCAGCCGAATGGGTTATTGGAAAAATAATAATCTTATCAACTCGTATAAAAGTATTTTGTTAGAAGTAGTGCAAGGGTGGCTTATATCGTATATTTTATTGTAGGGGGTGAATAAAATGATATTGGTAGAACTAAAAAAAGAACATGAACAATTCTTGGAAAAGTACAACATAGATAAAAACGACTATATTGGTAAAGATATTAATCAATTAATTGATATATTAGATGATTTATCTGTTGATTCGTTGGATGACAATGAAGAAGCAACAGATGAAACGAGAGCGATTGAAACTGTTATTGATGATATAGCATATAACTATTAGTGTATTGAGCATACAAAGTAGTAATGAGTTTTGATAAATAAACAAATAGCTTAAAAAAGTATGCTAAAGGTGAACATGATATTTTGTTAACATTGATGTTTTTGAAAATTGAATGCGTTATAATAAGTCTAGAG # Right flank : GCTATTATGCCAAAAAATGTATTGCTTATTTTTACCTTAAAGGTATACTGAAGATATCATGAGAGGAGCTGCTTACTTATGATAGAAAAGATAGAGGTACAATTACGCTAAACAAAAGTGAAACTGTTATATTTGCAAATGAGAAATTTAAGCCCTTTAACAATATGATTAAAAAAGAAAGTTCTAAACCTAACACTTAAAAAAATGTAAATAATGAAAGAAAATAATTATTAGTAAATTTTCGCCTTTCTCGGGTATTTTATAGTATAACTTTTGTATTTAAAACTAAGTATATTGACATGGTT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 8591-9337 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRF01000068.1 Staphylococcus rostri strain DSM 21968 ad82c537-9ccb-4044-81e6-1ba5860873f3_c68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 8591 36 100.0 36 .................................... TAGACAGGAACAAAGATATAGCCCCTATTACGTACA 8663 36 100.0 36 .................................... TTCATATAGAGATACGTATTGTTCAAATAATGAATG 8735 36 100.0 35 .................................... CAATATAATTATTTTTCATAATAAACACTCCTTAT 8806 36 100.0 34 .................................... TTTAACTCTTCAACAACTTCACATTTGCTTAACG 8876 36 100.0 36 .................................... TGATTGACCTCAGGAAATTTTTTTGTCATTGTTTAT 8948 36 100.0 31 .................................... AGAGTAATGTTTTAATATTGTATAATCATTG 9015 36 100.0 37 .................................... CTCTTTGTTTCTCGTATAACTCCATTACCTTACCTCC 9088 36 100.0 34 .................................... CGCTTTTGAAAAGTTCTCGTTTCATCATTTTGTC 9158 36 97.2 36 ............G....................... GTAATAACCACAAACATGTCGCTTATACTGTCTTTG 9230 36 97.2 36 ................T................... TCATAGTATTTTTTCATTTGGTCTAAGTCATCTTCC 9302 36 94.4 0 ..................A................T | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.0 35 AAACAGAGAGTAACCCCGTTAATAGGGGACGAGAAC # Left flank : GCAATCCTACCTGATATTAAAATGTTTTTTCGAAGTATTATGATACAATTTGATAGTTTTTTTAGTGAATATCAAATGTACGATAAAGAAACTTTAGATTTTATAGTAGAGAATGTATTTATATTAGATTACGGAATGAGAAGCACACGATTTCATATCGAGAAAGTGAAAATTCCATCGTTTATGGGAGAATTAACTATAAAAGTGAATGGACCAGCACCATTTTTAAAGTTGATACATTTTTTAATTGCTTTTGGTGAATTATCAGGTGTCGGGATTAAAACAAGCTTAGGTATGGGGAAATATCAAATTATGGAGAGTACAGACACTAATTAAAATTGTTATTTCTAGAATGTATAGCTACTTATTTTCTGGCTAATATGATATATTTGTTGTCCATCATTTGGACATGCACTATATTGTTTGTATATGTTTGTCTAAATTTTGGGCAGCGAATAATGGCTAGAAGTGTTAGTATTACAGCAATAAAGGCGTTGTCT # Right flank : TTATTCTTCAACCCTAGGAGATAGAGAGAAGTTTCGATAATAAGAGGATTAGTTAGAAATACTGTGAGGTTTTAATTAACAGATGCATAATGTTGTAAGAAATATACTTCTGTTTGCTTTTATTGCTTCTAATTTATATAAAACGCACACTCATTTATCGAATTTTCTTATAATTCAATAGGTTTTATGTATTAGACACTTATTACACCCTTTGGTAGATTAAAGTAAAGTCATATATCAAGGGGGAAATGTTATGGAATATTCACCAAAGCAAGGGGTTAGAAGTCATGGTTTGCCACATGATCCGTTTAAGAGTAGTACGGTACCACGTCCGATTGGTTGGATTTCGACGGTGTCTAAGGATGGAAAGGATAATTTGGCGCCGTATAGTCAGTATCAAAATTTAACTTGGGACCCACCAATGGTTATGTTTGCGGCGAATCAGTCGGTATTGGGAGATCATGAGCGTAAGGATACTGTGAAGAATGCAGAAGAGACAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACAGAGAGTAACCCCGTTAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 656-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRF01000110.1 Staphylococcus rostri strain DSM 21968 ad82c537-9ccb-4044-81e6-1ba5860873f3_c115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 655 36 100.0 38 .................................... TTTATTTACAATTAACATTGTGAAATGCAACACATCCA 581 36 100.0 35 .................................... GAAAAATGATGATAAACTTCATCCCGAAAGTTTAA 510 36 100.0 36 .................................... TACAAATACAATTCATACATATCGTTTGAGTAACTA 438 36 100.0 35 .................................... TCACTTTTCGCAATCACCATATCTTTGATGAATCG 367 36 94.4 36 ...............T................A... TTTAACAGTGACTTTCACTCTGTTTCCAATTTTCAA 295 36 91.7 0 ..............................A.A..T | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 36 ATTAGATAAGAACCCCGATAAATAGGGGACGAGAAC # Left flank : AAATATGAATAATTTTATTAAAAGTATAAGCTATACAGATGATTTGAACTATACAGTATATGATAAATCAATAGATGAACTAGGGGATAGATTTAATATTGCTAAAGATAGTGATATTGAAAAAGTGTTAGCGATTATGAAGAAAAATAACCTTGAAAATAATGGGATTGAGTTTATTAATATCTATGATTATTTTGTTGCTGAAGAATTGACTGAAGAACAGATAAATAACATGGAACTTTAAGAGGGATAATTTGTAGTTGGGATATGGTGAGTGCAAAGTGATTTATTTAATTTCTGAGCTGTAAAGTTTAATTAATTGCTGTAATTTTTAAGTTATATAGATTACACTATCTATATAGGCAGTTTTTCTTTAAGGAACCCATATATTTTTGCCCGTATAAGAGACATTTATGAGCTGCCAAGAAGTGATTTGGTCATCTAGGAGACAAGCAAAAGAGCCCTGGAGTCTTGATGTTATGGGATTTGTATAAGTGTCT # Right flank : TATTTATTTTATAAAAGCGCTTCCAAAAGTGTTGGATATCTTATAAAATTAAGGGGATAGAACTTAAAAGATGTGAGGAGGCAATAGATGAAAGATATCATTTATGTTGAAAATCCATATTTTATTACAGCTAAAGAAGATAGTATTAAATTTAAAAACATTAGAGATAAATCTGTTAAATACTTTTTATTTAGTGAGATAGATGCAATAATATTTGATCATCCAAAGTGTTATCTCACTCAATCGTTAGTAGTAAAATG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATAAGAACCCCGATAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //