Array 1 201109-203760 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWX01000012.1 Cronobacter sakazakii strain CE62 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201109 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 201170 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 201231 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 201292 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 201353 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 201414 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 201475 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 201536 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 201597 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 201658 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 201719 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 201780 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 201841 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 201902 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 201963 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 202024 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 202085 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 202146 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 202207 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 202268 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 202329 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 202390 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 202451 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 202512 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 202573 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 202634 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 202695 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 202756 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 202817 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202878 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 202939 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 203000 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 203061 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 203122 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 203183 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 203244 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 203305 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 203366 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 203427 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 203488 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 203549 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 203610 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 203671 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 203732 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230197-231385 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWX01000012.1 Cronobacter sakazakii strain CE62 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230197 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 230258 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 230319 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 230380 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 230441 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 230502 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 230563 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 230624 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 230685 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230746 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 230807 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 230868 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 230929 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 230990 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 231051 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 231112 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 231173 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 231235 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 231296 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 231357 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 479549-479697 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWX01000011.1 Cronobacter sakazakii strain CE62 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 479549 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 479609 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 479670 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //