Array 1 26538-22269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000020.1 Anabaena variabilis FACHB-164 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================ ================== 26537 23 100.0 50 ....................... ATTTAAATAGCGCCAATGGCGCTTGTTTTTTGCTTAGTTTCTGCATACCT 26464 23 100.0 53 ....................... GACATCTTTAGGCATGAACACCGGGATTTTATCCGTCTGGTTTCTGCATACCT 26388 23 100.0 52 ....................... TGAGTTTATCCCCGATGAACCAGAATCGCAGCTAGATGGTTTCTGCATACCT 26313 23 100.0 50 ....................... TGGACAGCCTTCGCATTGATTCGGCTGCAAGATTCAGTTTCTGCATACCT 26240 23 100.0 49 ....................... CTAACTTTCGCTGGATGCTCATATTTGATGGGCTTGTTTCTGCATACCT 26168 23 100.0 54 ....................... GATCAAAAGGGATAATTGGAATTCGCACCCAAAATGGGCAGTTTCTGCATACCT 26091 23 100.0 51 ....................... ACCGAATGCGGGATTAATTATTCTAAAGTCCATGTTTGTTTCTGCATACCT 26017 23 100.0 51 ....................... TAAACTGTCGTCACTCTTTCCATTGTGAACGGGGCATGTTTCTGCATACCT 25943 23 100.0 48 ....................... TTGCTCAAATTGTTGAAGCCTTCCAGACGCAGCAGTTTCTGCATACCT 25872 23 100.0 54 ....................... TTCACATACGACCAAGGACTTACACCAATGCCAGCTTCAGGTTTCTGCATACCT 25795 23 100.0 49 ....................... ACTGGATGTAATTCGGGCTGATATCGCACAAGTCAGTTTCTGCATACCT 25723 23 100.0 54 ....................... AACATCTTAGCCCCTTCAAAAAGCCTGTACCACGTTCCATGTTTCTGCATACCT 25646 23 100.0 52 ....................... ACGAAACCAAGTCATTAGAAGCTGATTGGTTCACTCATGTTTCTGCATACCT 25571 23 100.0 59 ....................... AATCACTTGCTAGGGACATATAACCGCTCCTTTTCTTTCCCCCTAGTTTCTGCATACCT 25489 23 100.0 51 ....................... TTTTTTTTCCTTGAGGTGCGCCATCTTTCTGTTCCAAGTTTCTGCATACCT 25415 23 100.0 51 ....................... GGTAAATCAGTGACAGTCATTAACAATTTCGTAACTAGTTTCTGCATACCT 25341 23 100.0 48 ....................... CTTTTCTCGCAACACATCGCTCTTCATCTTGGCTGTTTCTGCATACCT 25270 23 100.0 51 ....................... GTTTCATCAGGTCAATGCTCATCAGAGGAGGATGCAAGTTTCTGCATACCT 25196 23 100.0 49 ....................... ATGATTCCTCATCCGGGATAAATTCCAACCTCAAAGTTTCTGCATACCT 25124 23 100.0 50 ....................... AATCCCACCTTCCCGTAAATGTGGGCATCCTGAAATGTTTCTGCATACCT 25051 23 100.0 54 ....................... ATTAATCATGGATTTCAGAATAATTAACCCCACATTTGGAGTTTCTGCATACCT 24974 23 100.0 51 ....................... GAAGTTTGTGTCACGCCTACCAGTCCTTCAGCATCTGGTTTCTGCATACCT 24900 23 100.0 54 ....................... GTGGATTGGGTGGTGGATTGGGTGGTGGATGAAACCCTTGGTTTCTGCATACCT 24823 23 100.0 52 ....................... CTCTAAAGCTTTCAAGGGCAGTGCAAGTCACGCCACAAGTTTCTGCATACCT 24748 23 100.0 52 ....................... ATGAAGATTTGGGCTATTCTTATGGATGTTTGTCTACTGTTTCTGCATACCT 24673 23 100.0 49 ....................... GAATAGAGACCCATATGGGTTCCCAAAAAGTACAAGTTTCTGCATACCT 24601 23 100.0 48 ....................... CTTAACCAAAAATGGGATGAGATTGCTGGTAGTGGTTTCTGCATACCT 24530 23 100.0 51 ....................... TCTATTACGTAAAACTATGTCATTTGCAAAACCACAAGTTTCTGCATACCT 24456 23 100.0 50 ....................... AAGAAAAAACATTATGGAATCAAGCTGTAGTGGAATGTTTCTGCATACCT 24383 23 100.0 52 ....................... TATAATAGGATTGATGATTGCACTTAAACGTTTGCTTGGTTTCTGCATACCT 24308 23 100.0 51 ....................... ACCGCCTAAATGGTTTCTTCCTCTTCGTGGGGGCTTTGTTTCTGCATACCT 24234 23 100.0 51 ....................... TTTCTTTACCTTGCGGAGCGCCATCTTTCTGTTCCAAGTTTCTGCATACCT 24160 23 100.0 52 ....................... GGAATAAATATAAATCTAGTATTTGACGGGTGCAATATGTTTCTGCATACCT 24085 23 100.0 52 ....................... CAATCTTCCCCTTTCGGTCAGACAGGTACTGGACTTAGGTTTCTGCATACCT 24010 23 100.0 49 ....................... AGTATTATGCCGTAACAGAAAGCGGTACAGCCTATGTTTCTGCATACCT 23938 23 100.0 49 ....................... GTAAAATGTACGCGAATCGAGCATTTTTACCTCCTGTTTCTGCATACCT 23866 23 100.0 48 ....................... AACACATGGCTGTACCCGGAAAGCCTTCATTTGGGTTTCTGCATACCT 23795 23 100.0 49 ....................... AAGACAAACAACAAGTGAATCACCAACCCAAATTTGTTTCTGCATACCT 23723 23 100.0 54 ....................... TCCCGCTTCTGCGGCGGCGACTACTTCTTTGGCGCGCTCAGTTTCTGCATACCT 23646 23 100.0 54 ....................... CTGCCACCACGATGCTTGATAAAGCTAATGACCTCTTGTGGTTTCTGCATACCT 23569 23 100.0 54 ....................... ATTTGTCAAATACTCGGATTTATTGCACAATTCTTCCCTGGTTTCTGCATACCT 23492 23 100.0 52 ....................... CTCTAAAGCTTTCAAGGGCGTGCAAGTCGTTTTATAAAGTTTCTGCATACCT 23417 23 100.0 54 ....................... GATCACAAGAAAATTTCATTTCTTTTTCTAACGCTGACAAGTTTCTGCATACCT 23340 23 100.0 60 ....................... TTAAATTATCTTCTTCACCCTGATAATTTAATAAAATATTGTCAGAGTTTCTGCATACCT 23257 23 100.0 50 ....................... CAATTGATTTGCTGGGGGGGGCTGCAATCTATGCCAGTTTCTGCATACCT 23184 23 100.0 50 ....................... TTAGCTCCCCTACTGCGGCAAGGTATGCTAACGGTAGTTTCTGCATACCT 23111 23 100.0 54 ....................... ATAAGTTCAGCATATAATTTAGCTTCTTTTTTGGCATCAAGTTTCTGCATACCT 23034 23 100.0 53 ....................... TTAGCACTTCTTGTTCTGTCTGTTCTTTGACGATTATGTGTTTCTGCATACCT 22958 23 100.0 51 ....................... ATTCCTTGATATAGAAATAGAATTTACCCTCTTTTTGGTTTCTGCATACCT 22884 23 100.0 52 ....................... TCAAAATCGACTGAGAACCTAATGCCGTTCTGTTCCTGGTTTCTGCATACCT 22809 23 100.0 52 ....................... GTAACTTGGTGTGGGTCAATCTTGTAGAAATTACCCTCGTTTCTGCATACCT 22734 23 100.0 49 ....................... ATTGGTGTTCCCGGTGCAACTGTGGCTGCTGAAAAGTTTCTGCATACCT 22662 23 100.0 56 ....................... ATGTATTTATGCTGCTTGCTTTCCGGTAATCGGGATAGCCAGGTTTCTGCATACCT 22583 23 100.0 50 ....................... GTGTCAATTCGGATAATCTGATTCTGACCTGACGAAGTTTCTGCATACCT 22510 23 100.0 53 ....................... AAAATCTAAACCATGATCCCGATCATAAGAGATCGGCGAGTTTCTGCATACCT 22434 23 100.0 47 ....................... ACATTTCTTCTGAATAACGGCATGTCAACTAAAGTTTCTGCATACCT 22364 23 100.0 50 ....................... GCCCTCTCTGTACTTTAGGAAGCTTATCTAACAATGGTTTCTGCATACCT 22291 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================================ ================== 58 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATCTGATTATTTACGACTTACCCGATAATAAAGCAGCAAATAAACGGCGTACTCGCTTACATAAAATGCTGAGTGGTTATGGTAAGTGGACTCAATACAGTGTGTTTGAATGTTTCTTGAGTGCGGTACAGTTTGCTACACTACAAACAAAGATAGAAAAACTGATTAAGCCTGATGAAGATTCTATTAGGATGTATGTACTAGATGTTGGAAGTGTGAAAAGAACTATCACCTATGGTTCGGAAGTACCTAGACAAGAACAAGCAATAATTATATGATGAATACATCAGCTAAATTTTGGCAGACCTAGAGCGGGGTCAAAAACCCCAGGGATTCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCATAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGATGGCGGGGTTTCTGCATACCT # Right flank : TCGAATACCTGCGATCGCTACACTAGGTCAAGACAGCGCCTTATTTTTAGATAAAATACAAAGCCACACTAAACGCCGCAGAGTTTTTCAATACAGGACTGAGTTTCCTCTAAGAAACCCCAGATGCAATATGAAATGTTGATGAAGCGGCAAAGCAGTATATTCACTGAATAATGCACCCCTATAGTTTATCTGGGTCGGAATATTAAGTAATTCAAAACCGCTACAGTTGGTAGGTTTAGGGATTTAGTGTTTACTTGACACGAAGAGACAGAGTTATACTAACTCGCCATTGTAACCGTATCTATGCTTAATTTATATAGCAGTGTTTAGCTATTTACTGAAGTTTAGTTACAGTGTTTATTTATTTAGCAACGAAAATATACAAAAAATAAACTAGGAAAATGATTAAAACTACGCTTAAATGCGATTATTATCAAATAGATATATCAGTTGCTACGTCAGGCAATGAGCAGATGCTAATAGAAAGACCATTGGTA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78868-80164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000011.1 Anabaena variabilis FACHB-164 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 78868 37 100.0 39 ..................................... AGCTTTTAGAATTAGCTGAGGAAGGCTCAACAAATCCAG 78944 37 100.0 33 ..................................... TTTTTCTTTCTCAGGCAATTGATGGTGAATTTG 79014 37 100.0 36 ..................................... CTTTTAAAGCTTCTTCTAGGGCTGACATTGAGAGAT 79087 37 100.0 37 ..................................... CTTAATTCATTAAGGAGAGTAAATTTCATCATGTTTC 79161 37 100.0 41 ..................................... TGAGAAGGACTTGTATGCCCATTTGTACCCAGTCTGGGAAT 79239 37 100.0 32 ..................................... GTGAATATTCTTTTGCCTCTCTTGCTTCTTTT 79308 37 100.0 40 ..................................... TCTATCACTGTAGTATTTTGCTTTGCTGCTGAGTCTATTG 79385 37 100.0 31 ..................................... TGTGAAGCCAAGCCCAATCAGCAGCATCTGA 79453 37 100.0 35 ..................................... CCATCAAATATCCGCTTTCTTTTAAAGCCAAAATG 79525 37 100.0 41 ..................................... ATAAAAACTGACAATGGCAAGGACTACAGAGCTAATTACCT 79603 37 100.0 37 ..................................... TCCTCATCACCAGCAATATCTCTCAGTTCATCCAGCC 79677 37 100.0 37 ..................................... TAGAGCGTAAATTCTTGGGGGATAAATTTCCCCCTTT 79751 37 100.0 42 ..................................... TGTATAATCCTTAATTAATCATCTCTGCATTAAGCCCATCGC 79830 37 100.0 34 ..................................... CACCAATTAAGCCTGCTATTAGCCTTTGAAGCAA 79901 37 100.0 40 ..................................... CAACTATCTATTCATCCTGAATACATTACTTATCCATCTA 79978 37 100.0 35 ..................................... TTAATTACCTCGGCGGTTCGATTAAACTTTCAATC 80050 37 100.0 41 ..................................... AAATAAATGCGACTTTCCAATTGCTTGGGAGGCCGACATAA 80128 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 37 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGTCGTACTAAAATTCACAATATCCTCAAATCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAACTGATACTCAGTATGCTAAACTGCGATCGCGTCTCAATAAACTTATTAAGGCAGATACCGATAGCATCCGTTTTTACTTCCTCTGTGCTTGCTGTTTTGGTAAAGTGGAACGCATCGGTGGTGAACAACCCCGCGATGAGACTATTTTCTTCGCTTGATGCGCGGATGGGTGGGTGTAAAAAATCCCGGTGAGCAAAAAATGGCTGAAATCATATCTATACAAGGTTTTCATGGCTTTTCTTTGGTTCACCCATCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTCACTCTTGACACGATTCCTGAAATGGACTATCATCAGATCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCGGGCTACCGCA # Right flank : CATTAGAAAAGAGATTTTGATTTGTGACAATTTTTGGGCTATTTGTATCGGAATTTTCTTAAGATTCAACACCTCTGATATTATCTTTAGGTGTTTTTATGCATTAACTGTATCTTCTGTGTATGCCTTAATTGTTGTAAAAACTTTATGAGTTGCGATGTAAACCTATTAATACTTATTGGGCTAAATTAGCAAATAAATACCTAAAATCAACCTCCCAAAGTTGTTGTTTCTAACTTTAGTTAGAGGGTTAAATCTGAGAACTTATCATATGATGGTAACTTATCATACGAACATTTTTCCATTACTTGTGCGTAAGTCTTAAATCAATTAAATCTTTAACAGGAGAATAATCATGTTAGATATTGATGAAATGAGTACAAAAGAGATCCATGATCTTTTGCAAAGAGTAGGACATGGACACCTTGCTTGTGCGCTGGAAGGACATCCCTATGTTGTGCCAATGCAGTATTATTTCGACGAGCCAGATATTTACATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 27282-25606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000003.1 Anabaena variabilis FACHB-164 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 27281 37 100.0 35 ..................................... TTAAAAAGACCACAACATCAGTCCTGATAAGCATT 27209 37 100.0 38 ..................................... CTGCCAAACCCAGATTTTTCAAGAGCATCATACTGGTA 27134 37 100.0 36 ..................................... GTGAAGACTGCGATTATTATGGTGATATTATTGTTG 27061 37 100.0 35 ..................................... CTGTTGACTCTGTTCAGTTTCTTGAAAAATGCCTT 26989 37 100.0 37 ..................................... CCTTTTGCACTTTTAATGCAAATTACTTTTGCCGAAT 26915 37 100.0 37 ..................................... GTATGCTTATCGGTAAGGATTTGAATGGGTTTGTGGG 26841 37 100.0 34 ..................................... TAACTTTGCTTCTATCGTATTTCTGAAAGTTAGA 26770 37 100.0 41 ..................................... GCTACTCCCTCTTGGAGCGCAAAAGGGAATTTGTCAAGGAC 26692 37 100.0 35 ..................................... ATTGATAAAGGATAGTGATTATGACCAGTCCATAA 26620 37 100.0 34 ..................................... GAGTATGAATTTGCGATCGCTCCCAACCGCAAAG 26549 37 100.0 41 ..................................... AGATCAACATTAGGTCTAACTTTAGATCCTTTTCCTATTAA 26471 37 100.0 34 ..................................... ATTTGAGTTACGTTGAACATTGTAATTATCATGA 26400 37 100.0 40 ..................................... ATTACTCAAATAAACAGAACAATGTTAGAGTATTTTTCGC 26323 37 100.0 41 ..................................... ACCAAATTGAGTAGTTTCATCTTTCAGTCTGTCATATGTAT 26245 37 100.0 40 ..................................... CATTCCAGATATCAGCAGGTTTTTCTGGTTCACTACCAAA 26168 37 100.0 34 ..................................... TGCTAATGACACAATTATGGAATGGTACAAAAGG 26097 37 100.0 40 ..................................... AAACGAGAAAGCCTGGAAAGATGGTATTTCGATATCTCAA 26020 37 100.0 40 ..................................... CTTACCTTGCCAATTACTCCAAGCCTTACGGTAGTTTTCT 25943 37 91.9 42 ..........CTC........................ ACCAACAGCTTCTTGAGCTAACTTTGCAACCGCATCTTTTAA 25864 37 91.9 41 ..........CTC........................ CATCAAATGCTTGATCGCATAAATTATTTTCTACTTCTTTA 25786 37 91.9 37 ..........CTC........................ TTTCTATAAATGTAACGCCTTCGTCTAACGCTCTACA 25712 37 91.9 33 ..........CTC........................ GACAATTAACTGCAACCATTCTTCGTGACACGG 25642 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 98.6 38 ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCCACATCCCACACCAACCCAGTATATATTGATGAGGGAGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAAGCACTCAACAACAGTACCTTACCTTATGTTGTGCAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTTAATCCTGCTTTGGCTAAGGGTTTGAATGTGCAGAATGGCCGTTTGGTACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTAAGTTAAGAATCGGCTTTTTGGCGCGGATGGGTGGGTGTAAAATTTAGATGGTGCAAAAAAATAGCTGTATCTCTTGATGGGCTTGGCTTTGCGGCTATTAATGTTGATGAACCATCCGCGCACCTTACAGTGACTGGGTTTCAGCGTTTTTTGTTCTTGACACAATTTCTGGAATGGACTATGATGAGCCTATTCGCGCAATCGAACCTTGAAAACCAAATATACAAAGGCTTTCAGCCTCCCGCT # Right flank : CATAGTTTGTATTTATTAACTTTTTTGCATATTTGCTTACGGAACACTACGCGAACGTAGTTCATTTAATCTAATTTCCTAGCATTGACCCTATTTACATCTCTTCGTGATAAAATGATAAAATTTCTTTGCTAAGTGCAGAAATTAAGAGATTATGGAAATAATTACAAGCATTTGATAGAGGAAAATCTCACCCATGAATAAATTATTAGATGAAGCCTTATCTCACCAAGTTGCACAAAGCATCAAAAGTAAAGCTAAAAAGCCTTTTGAAAATGCTTATAAAGCAGCTTTAGCAACCGAGGGTTCAAAGTATGTTCAAGGTTTTTTGGTATTTAGTGGTCAGCCATACAAACCTGTTGAACATGGTTGGATTGAATTAGAAGATGTGATTATTGATCCCACCCTTCCTTATTTGCAAAAAAACCATAAAGACCTTTGGTATTTTCCCGCGCAAAGTCTAACCATCAAAAAGCTAAAAGCAATAATCGACGAATCAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 277714-276642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000005.1 Anabaena variabilis FACHB-164 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 277713 36 100.0 37 .................................... GTTTTGGTCGCCAGTGGTTGATGTTGAGTTTGAACAA 277640 36 100.0 42 .................................... CAGACGGGAAGTTTCCCGAGTCCCACCACCCAGTGAAATTCT 277562 36 100.0 42 .................................... TATTCTCCTTTTTTCGTAAGAAAGAAAATACAACAATAGAAG 277484 36 100.0 38 .................................... TTGAGGTGGTCCATTTGTTTAGTCCGCCACCGTTTCCA 277410 36 100.0 36 .................................... TCTCTTTGTTGGTTAGGACAACGCGAGTACTGAGAA 277338 36 100.0 36 .................................... GCTAAAGTCAAATGATGGATTGGAAATACTTGCCTT 277266 36 100.0 39 .................................... AATGTGCCAAACATGCACGCTGCTTGTTGTTTTATGACA 277191 36 100.0 43 .................................... TTTTCATGATTTTAACCAGAATAATTTTTACAAAAAATACAAT 277112 36 100.0 37 .................................... CCACAGCCGCGCTGTAACCGTTACTTTCTAAACAATC 277039 36 100.0 38 .................................... ACTTAATAGAAAAAACTATGTTCTTAGCGATGTTGTTG 276965 36 100.0 37 .................................... AATTAAGACTCTATATTTATATGAGTTTTAATTATAC 276892 36 100.0 39 .................................... AGCATAGTTTCTTTCTGCATTTGTTTCTTGAACTTCTGT 276817 36 100.0 34 .................................... GAAAAGAATTGAACTTAGACATTTTTTTTACCTC 276747 36 100.0 34 .................................... ACTGAAGATAACCGCATACGATGCGGCTCAGAAA 276677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : TCTAAATGCTAGTCGTTGTTGTATATGATATTCCTGATGACAAAAGGCGCACGAAGTTATCCAATTTTCTAGAAGGTTATGGGCGAAGAGTTCAGTTTTCTGTGTTTGAATGTTTTTTGAATTTGGAGGAAATGCGACAACTTTATATAAATGTGAGAAAGTTAGTTAAACCTGAACAGGATAGTGTGCGGTTGTATTGGATATCCCAAGAAGCTGTTGAGAGGGTGTTAACAATTGGTGGTGAAGCACCCCAACCCCCGCCAAACTATTATGTCATCTAGGTTTGAGGCTATTCTAGGAGGTTTTTGTAACATGACTATCTACACACCTCAGCAAATCGCCCAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTGCTGTGTAAGGGTTTGAAGTATGTGTTTGATTAATTTTTTGGCTGGGTGTACAATCTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACCCTTACTGGGTAAAGGCTGCTAAACGAACT # Right flank : ACTGCTCTTTCCCATACAGCCGCTTTAGCGGTCGGGTTTCCTCGCCATCTTCGGTGAAGAAATATTTTGACCGTTGAAGTCTTTGCTATAAATACCAGGACAGAATTAATTACATATTAGACATATACCAACCCTTTGCCAGTTAAAGATTTCAGCGCAGTGTTTTGTGTAAATAATTTTGTCCAACTACCTCTCTACCCCAATATTTAATTAATTTTGTCATTCGCATCAATAGACAGTCGCCTAATTATCAGAACCTGTAAACTCATAAATATCAAAACATGAAATATACATTTGAATCCTAAGACAAAAATCATGAATAACAATGAATCCGTCTCCAATGTCTCCAATGTCTCCAATGTCCTTGAAGTCATCAATGTAAGTGAAAACGATACTATGAATACGGCAACGGAAGACACTTATATCAACGAAGGAGACAGATTTGGTAGTGATTTAGAAAAAGCCACCAAAGTTCGTCGAGAAACTGCTGAAATTTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 292894-291825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000005.1 Anabaena variabilis FACHB-164 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 292893 36 100.0 39 .................................... TCTGTTTGCCATATTTCTTTGGCGAAATGTAAGATTTCG 292818 36 100.0 41 .................................... CCTTGTGGGCATGAAAGCATAAATCCGACTGACTGTCCTGA 292741 36 100.0 44 .................................... GCCACTGTTTCCAGTGACCTGAGCATAAACGGCAGAAGCAGAAA 292661 36 100.0 35 .................................... GTTTGATTTTGCCCTAGCGACTGCGTCGCCTAGAG 292590 36 100.0 40 .................................... TTTTAAGTGTATAATCCCAAAGTTACGGCTTCTTTTTTAG 292514 36 100.0 35 .................................... CAAAAGTTACGTTAGACATGTTTTCACTGATATTT 292443 36 100.0 33 .................................... ATTAATAGGCGGCTGGGTCTGCGCATAAACGGC 292374 36 100.0 38 .................................... CAAATTCCTCAACATCCGTCTTGGTTGAGGAATTTGTC 292300 36 100.0 35 .................................... GGTAATCCAACTTAACGACCACAGCCGCGCTGTAA 292229 36 100.0 39 .................................... AAAAACGTTCTGTGATTGCCCTTGCAAGTTGCTTTGTCC 292154 36 100.0 41 .................................... ATTCTGAGATGCGTTTTCTTAAAGTGTGCATAATTGATTCG 292077 36 100.0 36 .................................... GAATTGCTCTGGCTTGAGTTATACTAAAGCCTTCTT 292005 36 100.0 37 .................................... ACAAGTCCGTAGTCACGCCATGGATAAAAGCACCATA 291932 36 100.0 36 .................................... TCTTTGAATATGTACCAAATAATGTCATATACATCA 291860 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 15 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : TAGGGTATAGTGTTATTGTTATTTTCCTAATTTATAGCGGTATGCACTTAGATGAGATACAGTCATTAAATTGCAAACCCTGTAGGAGCGGGGTTTCCCCGCCCTTGATTGTGTTTCATCCAACCGATAACCGCTATATTTAAATATGCGAATTAAGTTAAATATTCAAGATGTATGTTTCATTTTAGTCAGGTACAAATGATAATTTAACATTACTCGTGCGAATGACCAATCAGATATTATCTCAAAGTAAATTTGGTATCAAAGTCTTTTTGTATCTAGGTTTCAGGCTATTTGAGGCGATTTTGTATCATGACTATCTACACACCTCGGCAAATCGCTGAAACCCCTATTCTTTCGTTGAGGTGTGTCGAATGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGACTAATTTTTTAGATGGTTTTACAATCTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACTCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : TTGTTTGACAATTATAGGAGTTACGCATTGACAAAAAACATCAAATATATATAGACGTGAAAAACACATTTATCGTAGGGGTTTAGCAGTGCTAAACCCCTACCCCACGGTTGATTTATCGGCAAAAATAGAATTAATTGCAGCCTGAAATAAGGTATTTTAGTGAACGCATATCACGATTGATTTGTACAGTGCGTAAGTCCTAAATTAGTAAGTAAAATTGTAATTGGAAAATCAAAAATGATTCGTTTAGTTTTTGTTTTTGCTGTTATTTATTTATCTTTTTCTTGTTCAGCATTACTAGAAGAAGAAAAAACTCAAGAAGTGCGAATATACTGCACTAAAGACAATTTTTCCACAGTTAGCATTACCTGGAAGAGTAATCACGTAAAGCACAATCGTTTTGTGAACAACAATTGTCACCTAAAAACTCCCGTCTATGTTGGGAGATTCTTATTTTTTAATAGCTTAAAATCTACCCAAGAAGAAGTTGTTACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 121662-120034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000004.1 Anabaena variabilis FACHB-164 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 121661 37 100.0 36 ..................................... AAGATTTACAAACTGTTGCCATTTAAAATGTCATGA 121588 37 100.0 36 ..................................... CCGCCACTGCTTACTTGGCTTAATTCTAAAGCTGTA 121515 37 100.0 37 ..................................... AAGAAAATAGATTACCAGCCGCCTGATATATGCGGCT 121441 37 100.0 37 ..................................... ATGATATCTAGGATTTGACAAATTGAAAACATATATA 121367 37 100.0 36 ..................................... ATTAAGAAGAAATTCCCTGAGATAAAAATCTTGAGG 121294 37 100.0 35 ..................................... CCAAAAATTTCTACCAGTAATGGTATATGGATTAA 121222 37 100.0 34 ..................................... CTGATTCATCTTTGAACCTTGACTCAAATCTAAA 121151 37 100.0 34 ..................................... TACGAATCATCGTTTAGCCCCTTTCCTAACCTTC 121080 37 100.0 39 ..................................... AAAAAATATGACAGTAACAGCTATTTACGGCAAACCTGG 121004 37 100.0 34 ..................................... AACACAATCAACCATCATAAAAACCAAAGGTTTT 120933 37 100.0 34 ..................................... TTTACTAACTAAAGAGAGAAAGAATCATTATGAT 120862 37 100.0 38 ..................................... AAACTAAATGGCGGATTTGCAGATATTGTCACTGATTT 120787 37 100.0 38 ..................................... ATTCCAATAATTAACGGTATCGCCGCAATCGTTGGTAA 120712 37 100.0 38 ..................................... TTTGAACCATCACCTTTTAAAAATACAGATTCCTGTAA 120637 37 100.0 36 ..................................... ATTCACACTGATAATCCCAATCTTGTAGCCGCATTA 120564 37 100.0 37 ..................................... ATGACAAAACCGGGACTATTCCTACTACCTTGATTGG 120490 37 100.0 36 ..................................... GACTCATGGGCGCACCTAGTAAATACATCCCAGACT 120417 37 100.0 38 ..................................... ACGCTATCTCCTTTTCTACTCACCTCTACACCTCTTGA 120342 37 100.0 33 ..................................... ATGTACCTGCCTTTCCAGACACCAGTTATCTGA 120272 37 100.0 36 ..................................... TTTGCATCAAATAATCTGTTACGTAATTGATGTACA 120199 37 100.0 35 ..................................... GTTTCCTATCTCTCTTATTTTCCATTTATTTCTTG 120127 37 100.0 17 ..................................... TTCTATAGCGATCACCA Deletion [120074] 120073 37 75.7 0 T......AA........A.......CA..A...C..C | CA,C [120038,120042] ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 98.9 35 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : GGAAAACAAGGTGTAGGTGAAATATGGACTTCTCCCACACTTCCCTTTCTCCCAATTATTAAAGTTTCTCCATCAGTTAAGGCGCTATGATGATGACCAATAACTCCATTTGAACCATAGATAGGAAAGCCCGTGCCACTTCTTATGCGATTAGGTAACGATTTCCCGTAGTTAAATTCCAAAATCTCGCCCAAAGTTACTTCCATCCAAGACGACGGATACTGGCTCATACTTCCACTTCCTCGCCCAACTCCTCCAGAATTTTTCGCAACTCTGCCAGAGCTTCCTCTAATTCAGCCATAGCCTCCTGCGCGATTTCTGAGGGTTCAAACAATTCATCAGTTCCACTCTCGTTTTCATCATTGAGCCAAGAAATGTCTAAGCTGTCACCAAGTTCTGCTATCCAGTCACGAGTAAATTTTCTAAAACGTCCTTGTTCGCCAGTATCTACACGCTTGGCAAGGTAACAGTTCTAGACGGTAAAACAGGATATCGGCGTG # Right flank : TGGCACATTGATAAGGTGCGTCAGATATCAAAAATCTGTTTATTTACTAGATTTATGCTGTCTGACGCACCCTACAATTGATTTTTGGTGTGACACCTGCGTAAGTCCTATAGGGGTGAATTTAAAGGTGTGTAGTAAGTTTTATATTTGAATTAGATATATTATTCAACGGGAGGATTGAAAGGCGCACTTCGTTCGGGACTATTCTCAAGTTTTTTCCTATACTAGAAGTATAGTGAAGTCAAATCTACAGAATAAAAATAGACGACATTAATTTGTTAACAGTCAGCTAGAATGATTCGACGACACTAATTTGTTAACAGCGACATTAATTTGATAATAACGACATGAATCTGTTAACGACGACAAATAATTTGTTATTCGACAGCTAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCCACATCCCGCCACAAAAATTGCAATTGTCAAGTAATTATATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 485785-487883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000004.1 Anabaena variabilis FACHB-164 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 485785 37 100.0 40 ..................................... AAACCATGGAAATCATCCGTTACTCTTCTCTTTAGTACGT 485862 37 100.0 36 ..................................... CTTCAAGCAGAGTGCTTATCGATATTTTGTGATGTC 485935 37 100.0 36 ..................................... TCAACAGGTTCGCACTTTTTATGGACAGCTTGCAAA 486008 37 100.0 36 ..................................... TTTTAAGAAGTGTCCCTGACCAGGATAGATCATCTT 486081 37 100.0 38 ..................................... TAGAAGCGCAATTGTGGGAATCGAAGCTGAAATTGCTG 486156 37 100.0 35 ..................................... TCTGTCCAGTTGCTCACTCTGTTTGCCAAGTAAAT 486228 37 100.0 39 ..................................... CTCAATCAACACCTGAGCTATTGGGAAGATTAGAGGAAG 486304 37 100.0 35 ..................................... TGTTCCTGCTCAAACTGGAATTGCTGCTCTAGCTT 486376 37 100.0 35 ..................................... CATAAGTTGTAACAGCACAATAGGAGACTTGAAAA 486448 37 100.0 34 ..................................... TTTCGACTCAGGAGCGGCAGGAGTTGAGAGAGCG 486519 37 100.0 36 ..................................... ACACAATATTTTATTCATGCTCAAGGAATTACAAAA 486592 37 100.0 37 ..................................... AAAGGAAGATTGATATGAGGTTTGTGAAGATTCAAGC 486666 37 100.0 35 ..................................... GGAAACCTTTTATCTTCACTGCTTGACATGGCAGA 486738 37 100.0 34 ..................................... AAAACGTAGCTCGTGCCACCGAACGCACAGCCGG 486809 37 100.0 36 ..................................... CCCAAATTGGGGATAATCAATGGCTGCAAGCGACTT 486882 37 100.0 43 ..................................... CGGAACTAAGTCCAGTACCTGTCTGACCGAAAGGGGAAGATTG 486962 37 100.0 36 ..................................... CAGTGCCTGGGCGTAAAGATAAAATCGACATTGCAG 487035 37 100.0 36 ..................................... CTTCACCACCAACTATAAAAATTACTGGGCAATAAT 487108 37 100.0 39 ..................................... GTCGGCTAGTTCCGAACTAATCTTTTTGGCTTCACGTTC 487184 37 100.0 35 ..................................... TGTAGAAATTTCTGGAGGTCAGACCGTCCCTTGAT 487256 37 100.0 45 ..................................... CCCGCCGGGATATTTCACTGACCAATTTCTACTGCTGCGTTTCAA 487338 37 100.0 36 ..................................... TCTTATTGCATGGGACGGTAATTGTCCGGCGTTTGG 487411 37 100.0 33 ..................................... ATATACATTTTTGGAGCAATGAACCGATGACAA 487481 37 100.0 33 ..................................... AAGGCGTTCAAGGTGTTGCTGGCGCACGTGGTC 487551 37 100.0 36 ..................................... CTCTAAATCTCAAAGCCTAATTATTCCCGTAATTGG 487624 37 100.0 40 ..................................... CAGGAATAAAAACCGTCACCCGTCGTAATTGGTCAGAAAT 487701 37 100.0 36 ..................................... TAAAAATGGCGCTTTATCTTGACATAGACCAACCAT 487774 37 100.0 36 ..................................... CTAAAGTCCATGTTTTTTCTCTTGTTCTATTCTTTT 487847 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 29 37 100.0 37 CTTTCAACCCGCCCCACTTCGGGAGGGGTGTTGAAAC # Left flank : GCGCCCAGATGCAAGTAGTTGGTGTAGCGAACACTTACCCTTTTCATATGCTTCAGCGTCAAGCCAACTGGACTGTAGATTATTTGACTGATTTGGAATTGGAACGGGTGCAGCAGGTGTATTTGCAAAAAGATGTAAAATCTGCCGTGCCTGAGTGTTAAGATAGAGTACGTCTGTCAGAGTTTGCTACTCTGCACTCACAAGGGGAATTAGCTCAGTTGGTAGAGTGCTGCGATCGCACCGCAGAGGTCAGGGGTTCGAGTCTCCTATTCTCCATTATAAATTGTTGTCACTTGCCAAATAATTTGTCCGCGTTGACAAATTGTTGTCCGTCTTGCCAAATTGCTGTCCGTGCTGCCAAATTATTTGTCCTTAAATTTTATCTCCAGGTAATACACATAACTTATGTTGTGTACGATCGCAGCACTCCTTTCAACCCACCTTAATTTTATAACAGTGTTTTAATTTATTAGGCTCTGAAACAGAAGACAAAATTTAGA # Right flank : CTCCGCCCGACCAAACCCTTATCTGAAGACACTTCCAAAAGCAATTTTGGCGAATGTCCTAAATCTGCTCTAAATTTTCCTCTCAAAAGAGAATTATTGAAGCATCTAAACATCCGAAACACAGATTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGTTTTTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTTACTAGAAACAGCAGCATCAAGGTGGGCAGCTACTAGGGTCAGAAAGCACGACTGTCTCACAACAGTCAAACTAACCCGCATTTATCACAGGACAGAGGTTTATTAAAAACATGAACTGCGGCGCTATTGTTAATTACTATTCTATTATCAAGGTTCGGTATTTTGTCAATCAGGCTTTTCGGGATTGATAGGTGCTTATCGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTTCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 180069-181094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000006.1 Anabaena variabilis FACHB-164 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 180069 37 100.0 34 ..................................... ATTGAGGAAGCTGCATTTGCTAAAGATTTCTATG 180140 37 100.0 39 ..................................... AACGAAGAGGATAGTTGCTCTGGCTGTAGTGGTACTGGA 180216 37 100.0 40 ..................................... TAGGGATGGGTGAAGGGGCGGGAGTGGTGGTAGTAGATTT 180293 37 100.0 39 ..................................... TTAAACAGCTTCCTGAGCCTTACTCAAACCATTCTCCAA 180369 37 100.0 33 ..................................... CTTTTACTGGTAAATTTCCCTCTCTTCAATTAC 180439 37 100.0 34 ..................................... ATACTATCCCCTTTCCTACTCATTTTTTAATAAC 180510 37 100.0 37 ..................................... AAGATAAATCCCTAATTCATCAAACAAAACCACAGAA 180584 37 100.0 38 ..................................... GCTGGATACGAAAGCTCCCCCATCCGCTGGACTTTCCA 180659 37 100.0 31 ..................................... TTCATGTTCAATTCGTATGAGATGGACGGCG 180727 37 100.0 33 ..................................... CTTAGAAGTGATCAGGATCGTAATCAGGCGCTG 180797 37 100.0 33 ..................................... CCCGGATCGTAATAGGGAAACGTAATACATTTT 180867 37 100.0 34 ..................................... TATCAAAGCCACTGCACACATCCATGGTGTGCAT 180938 37 100.0 37 ..................................... TGGCCATTCTCGTGACTCATAACGATAAATATTATTT 181012 37 100.0 8 ..................................... TATAGTAA Deletion [181057] 181057 36 75.7 0 .A.....A....G..-T..TAC..........A.... | A,G [181061,181070] ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.4 34 ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Left flank : CCAGAAAAAGTACTTAGTCAAAGGACTGGTTCCTTTGCCAACAACTTGATCGACTGCTAGAGCGACGTTCTCATCTAACCAGAGAATTTTTAAAATGAACTTGGTCAATTACACCTCCCGGAAAAATCCGGCTATGACATTACTAAAGTTAGCGATGCTTGCGGCGGGCTACGCCGACGCTTATTTTAACGCAAACTCTGACCAATTGACCAATGATAGTTGGTGATGGATGATGATTTATGGGTGATTTCTGCCTAGAATTTTTTTCCCGGATTGCGCGGGTGGGTGGGTGTTAAAAAACCTGTGACTCCAAAAAAGGCTGAAATCATTTTGTAGCAAGACTTTCAAGCTTTTTTGAGTTTGAATCACCCGCGCACCTTATCCAGACTGGGTTTCAGCCATTTTCAATCTTGACACGATCCTGGAAATCGACTATGATTAGACCATCCGCGCAATCGAACCTTGAAAACCAAATACAGTCAGCCTTTCCGGCTCCTGCT # Right flank : CACAGTCCAAATGCTGGAATATGATGAGGATTACAGTTATCATTTGCTTCCATGACCAAACAAACAAATACAATAGTCATTTTTGATATAGATGGAGTAATCCGTGATGTTGGTGGCTCATATCGCCGCGCTTTAGCAGATACCGTAGAGCATTTTACCGACCAGGCTTATCGTCCCACACCTGTAGATATCGACAACCTGAAATCAGAAGGGATTTGGAATAACGATTGGGAAGCTTCCCAAGAATTCATTTACCGCTATTTTGTCAGTCAAGGAACAACCCGCGCACAACTGCAATTAGATTATGAAAGTATAGTTACCTATTTTCAAACTCGTTACCGGGGTACAGATTCAGAAAATTGGAATGGATATATTTGTAACGAACCTTTATTAGCACAGCCTGGTTATTTTCGAGAACTAACCCAATGTGGTATTTGTTGGGGATTTTTCAGTGGTGCTACTCGCGGTTCTGCTACCTATGTCTTAGAAAAACGCTTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 83190-82853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000007.1 Anabaena variabilis FACHB-164 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 83189 38 100.0 32 ...................................... CCTTGATTTGCCGTTGTTCAAATACATTGGAG 83119 38 97.4 40 .....................................G AGGATGCCGCAGATTGGGCAAAAACTTATAATCTTGTCGC 83041 38 100.0 35 ...................................... CGGCTTCAAATAGCATTTCTTTAGATTCAATTTCA 82968 38 100.0 39 ...................................... TAAATGCAATGATTTAGAGCAAATTTGGAAGGCTTATGG 82891 36 86.8 0 .........................CT...--.....G | G,TC [82855,82868] ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 96.8 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAACT # Left flank : GGAGTTTGGACAAAGGTGATGTAAATGCAATATGCAGGAAAATAAAATAGATATTTCATAAGTTTTATTTTTATGCTATGATTACCAGCCTTGCAAAAATACAATCATTGCTCGTTCCCAGACTCCGGCTGGGAATGCCTACCACGAGGCTCTGCCTCCAATCCCAGAATACAAGCTATTTTACCCGATTTTGTGCTGGTAGTTGAGGCAGAGCCTCATCAACTGCATTCCTAGTCAGAGACTAGGAACGAGAAAAGTCGGCGAGTTATTATTAATCGCTATGGTAAAAAATGCGCGAGGGGGTAGGTGTACAAAAAGCGATTCCTGAAAAAACAGCCAAACTCCTATTCCTGTAAGAGTTGTAAGGCTTTTTTGCTGTTCATACCCTCGCGCCCCTTACCCAGTAATGGTTTCAGCGATTTTTTCTCTTGACACGATTTCTGGAATGGAATATGATAATATGGCTCGTGCAATTGAACCTTGAAAACTAAATACAGTCA # Right flank : TTTTACCAGGATTTGAATTACAGCTTTAAACGACTCACTGGTAAAATTTAAACTTATATAATGCTGTAGCTTACTTAGATTAAGTACAAAATAAGAGTTTTTAGCCTTATTTAGTATAAATTTAAAATGTACCAATTAAAAAAGTTTGCTGTGCAAGACTTGTAAAAATATAAATACAGTTCCTGACTAAAAAATTGTATATGAAAAAAACCCTATTCCTGAGTCCACCTTCCTTTGATGGCTTTGACGGTGGTGCTGGTTCACGATACCAGGCTAAAAGAGAAATTACTTCCTTTTGGTATCCCACATGGTTAGCCCAACCCGCAGCCCTGGTTCCGGGTAGCAGGCTAGTAGATGCACCACCACATAGTCAAACTGTGGAAGATGTGCTGAAAATTGCCAAAGATTATGAATTGGTAATTATGCACACTAGTACTCCTTCCCTCGCTAATGATGTCAAGTGTGCTGAAGCCATAAAAGCCCAAAATCCAAATGTGCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 305529-303635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSU010000009.1 Anabaena variabilis FACHB-164 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 305528 37 100.0 35 ..................................... ACATTTCCTGATGGAGAAATCCGGGATTTCGGTGG 305456 37 100.0 37 ..................................... CACCCCAGCGTCACAGAAAGCAATTGCCCCGATTTTT 305382 37 100.0 32 ..................................... AAGCTATCGACGAAACAACATGGACAAAATAA 305313 37 100.0 35 ..................................... GACTCTTCTACCTATTCCAAGATTAAGCATCTCTT 305241 37 100.0 35 ..................................... TGACAGAGAGGGACTTTCAGAATAAAATGGCGTAA 305169 37 100.0 32 ..................................... CCTCTTCAAGCATCGACAAAGATTTACCAGAG 305100 37 100.0 48 ..................................... GAAAGAACTTCCCAAAGTATGCCAAAACCTATAAAAGGATACGATGAA 305015 37 100.0 37 ..................................... AGAAAAATCCTGATGGACATAATGCGGGTAGACCTAA 304941 37 100.0 33 ..................................... TGTTTAATTTAATTACCCGTTGATGGACTGCAT 304871 37 100.0 37 ..................................... ATTGCACTTATTGCACAAACTACAAGCCTATATCTAC 304797 37 100.0 39 ..................................... TCAGAAGGAGAAACGTACTGGGCGTTATGCTTGTGGATT 304721 37 100.0 41 ..................................... ATCATAAAAATCGAATTATAAAGATTCAATCACCGGGATTG 304643 37 100.0 37 ..................................... GTTTAAAATGCCCCATTCAACACGACTGCTATACACA 304569 37 100.0 45 ..................................... TTTCCAAGAATTTCCTAATTAATTTATGGGGCTAATTGCCCCTTT 304487 37 100.0 35 ..................................... ACTTCGCCATCGCCCCCCCGGCTAATCAATCTCTT 304415 37 100.0 40 ..................................... GCAGAGTTTACCCCATCACCTCCCAATATTTCCTGATTGC 304338 37 100.0 34 ..................................... ATAGGTGATCCACTTAATCGCCTTATCTCCCAAA 304267 37 100.0 33 ..................................... TTAATCGGAGAAGGACGTGCAGATGCGTTGAGG 304197 37 100.0 41 ..................................... TGGAGCAGAGAGTTGCGGCGTTGGAAAAATTAGTTTCCACG 304119 37 100.0 36 ..................................... ACACAGAAGATGCTGATGGAGTAGCACCTCAAGGTA 304046 37 100.0 40 ..................................... TTTTTCGACGCACAATTTGAACAATCATTCATAATAATTG 303969 37 100.0 34 ..................................... CTACATATTCTGGTCAGCCAACTGTCGCTTTGCA 303898 37 100.0 43 ..................................... GTTCAAGATGCTATCGACAACACTACGGAGACCGTCAAAGCTC 303818 37 100.0 37 ..................................... CCCTATTTGATTCTTGTGCAGCAACTCAAATACAAAG 303744 37 100.0 36 ..................................... GACAAATATCTCATCACCAAATGCAAACTGCACTTC 303671 37 78.4 0 .............T...C.......G..A...TTCT. | ========== ====== ====== ====== ===================================== ================================================ ================== 26 37 99.2 37 ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Left flank : ATAATGTGGCGCGGAATGAAAGTGATGTCAATTTCCGTAACCAGTTATTTGTGGCTTTAACCAGGGCGAGGGGTTGGGCGAATCTCAGCGGTGTTGGTAGTTATCCGATGTATGATGAAATGCGAAAGGTAATTGCTAGTGGGGAAAGTTTTACTTTTACTTATAAGCGTCCGCCTAAGCGGGATATTGGGGATGGTGATTAGGTTCAAATTTGGTAAAGTAAAAAGAATTAGGTGGTAAAAAGCCACAAAATAAAAAGATTCTCTTCCCCTAATGCGCGAGGGGGTGGGTGTAAAAAATCCGATTTCTCAAAATATGGCTGAAATCATATCTACATAAGGCTTTGATGGATTTTTTCTGTCTACACCCTCGCGCACCTTACACAGCAAGGTTTTCAGCGTTTTTCACTCTTGACACTTTTTCTGGAATGGACTATTATGATCTCATTCGCGCAATCGAACCTTGAAAACTACATATATATAGAGTTTCAGACTCCCGCT # Right flank : GTTCCCATACTCTGTATGGGAATGAATTTTAAAAGGCTCTGCCTTCTTTGTAAAGTGGAGGCAGAGCCTCCTCATGGCATTCCCAGTCTGAGACTGGGAACGAGATAACTTATATAATACTTATTTACCCATACACAAAAACTGGAACTCTTTTATAAGCAGGTGTACCACTGTGAGGATCAATTTCTGCCTTAAATAAAATATTAGCTTCAGGATAAAACATAAAAGCTACACCTTCACGAATTCCACCACAAATAATTTCAATATTGTTTAATTCTCCTGCATTTCCTTTAACTGTAACTTGTTGATGTTCCTGAAATCCTGCTTTTTTAATATCTAAACTATTCATCAAAATACAATGACGATGGGGCATATTTCGATATTTATCTTCACTCCGATAAACTACAGTATTATGTTGACTATAACTGCGTCCTGTTCCCAATATGACTACAATTCCTGACTGATTTTCTGAAACTCCAAAATCTGATTTATTCGGTAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //