Array 1 41703-41386 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BLLI01000001.1 Lactococcus hodotermopsidis strain Hs30E4-3 sequence001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	====================================	====================================	==================
     41702	    36	 100.0	    36	....................................	TTTTAGTAGTAGCGAATATGAGTTACATTCACTAAA	
     41630	    36	 100.0	    33	....................................	TCAAATACTACGGCTTTATTGGATGATAAGTCT   	
     41561	    36	 100.0	    32	....................................	GTCATAAAGTGATACAATGTTTTGAGCGCTTC    	
     41493	    36	  97.2	    36	...................C................	TTGTTGAACTTGCGGTCTGAAAAGTTATCAGGGCTT	
     41421	    36	  94.4	     0	................................T..A	|                                   	
==========	======	======	======	====================================	====================================	==================
         5	    36	  98.3	    34	AAATAGCCCCATTCCTCGTTAAAAGGGGACGAGAAC	                                    	       

# Left flank :   GTTGTCATTTTAGCTAAAAGTGAATATGATGAACTACAAAAAGAGCTTGCAAGATTGCAAGCTAAAGTTAAGTTGTTTTCTGTTATGGAAGCATCAACGTCAAAAGTTTTCAATGGAGGCTCAGACATGTCTTATGATACTTTTAAACAAAAAGTAGGGTGGCAAAGTTAATGAGAATGCTGGTTACTGATTCTTTCTATGAAGATTACAATGGTATTATCAAATTTTTAATTGAGAATAATGCGACGCAAAAGTATATCGCAAAAGTCGAAAGTGAGATTAAACAGGCTTTAGATTCTATTGAGGAAAGTCCATATGGAAATCCTAAAATTGAAGATACGCCGTTTAGGAAGAAAATTAGATTTAAGTATATTACTTTATATGTAATATATGATGAATTTGTTCGTGTCGCTAGAGTTTTTCATGAAAAAGAAGATTGGATAAATGAATTGGACTGAGTGATTAGAGAAATATGGTGGGGAAATCAATTGCTTACTATG
# Right flank :  ACCGACAGAAGTCGTGTTTTTTATTGACAAAAAATGGTAAAATGAAGTATGACTTTAAAAATCAAGCAGAAAATTCCGCTGAAAATAAAAAAAATCGGTATTAATGGCGAAGGCGTTGGCAATTTTAAGGGGACGACGGTTTTTGTTGCGGGTGCGCTCAAGGGCGAGGAGGTTTACGCCGAAATTGTGACAAGCGAGCGCAATTATGCGACGGCGAAAATGCTCAAACTCAATAAAAAATCGCCTCATCGGGTTGTGCCGATGTGTGAGAGTTATAAGCAATGTGGTGGTTGTCAAATCATGCACCTAGCTTATCCGCAGCAGTTGCTGTTTAAGCAAGATTTGCTCCGCCAAGCGCTTCAAAAATTTAAACCGCAAGGCTATGAAAATTATGAGGTGCGCAAAACGATTGGCATGAAACAGCTGCAACATTATCGGGCAAAATTGCAGTTTCAGACACGTTTTTTAGGCGAAAAAGTTCGTGCGGGTCTTTTTGCGGA

# Questionable array : NO	 Score: 2.97
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AAATAGCCCCATTCCTCGTTAAAAGGGGACGAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-8.00,-5.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.41   Confidence: LOW] 

# Array family : NA
//