Array 1 652907-650814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJH010000001.1 Listeria marthii strain FSL W9-0631 NODE_1_length_917041_cov_46.221803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 652906 29 100.0 35 ............................. CCAGCCGCAAAGACATGTTTCACATCAGCAATGTC 652842 29 100.0 35 ............................. CAAAAAATCTATCATTGTAATATGAAAGTAATTGT 652778 29 100.0 36 ............................. ATATATTCACGTCCGTTTACATGTACTGTATCGCCT 652713 29 100.0 36 ............................. AATGAAAAACCAGTTGACGTAAATATCTACAAAGAC 652648 29 100.0 36 ............................. TTTTTTAGGTAGTCCTTCTATAAAGACAACATAGAA 652583 29 100.0 36 ............................. ATTCATATGAGTTTTCTTTAACGGCATTTGTTTGAC 652518 29 100.0 34 ............................. TCTTCACTAATTGTTACTTCAAAATCAGCTACTG 652455 29 100.0 34 ............................. GATGATAACACATCTGGCTTTTTTGCATTATCCC 652392 29 100.0 36 ............................. ATTACAGATAACTCTCTATATACTAATCTACAAATC 652327 29 100.0 35 ............................. TTTTATGCTATAATTTTTTTAACGAATTTAAAAGA 652263 29 100.0 34 ............................. GGGCTTGATTACAGCCGTTTAAACGAAAAGTATG 652200 29 100.0 35 ............................. CTAAAAATGCTTCTAATGAATCTAAACGCCTTTTG 652136 29 100.0 35 ............................. TGCTTATAACGAACTCGTATCCCATAACGCTTTCG 652072 29 100.0 34 ............................. TTATCTGCAAAAGTTCATTTGGTGCATATTTCGA 652009 29 100.0 35 ............................. ATTTACGAGGCGCATTTCTAGTGGTTTTATTGCTT 651945 29 100.0 38 ............................. GAAGATTGCATCCGAAATACAAACCAAACGGCGCAACA 651878 29 100.0 37 ............................. GCTCTAGTGTATCAAATGTAAAGCCCCCTCCATTCCC 651812 29 100.0 34 ............................. GTTTTTAGACAAGGAGGCAATAAGTACATTTTTC 651749 29 100.0 34 ............................. TCATATTCGACTAAATCATTCTCATTTCCATTAA 651686 29 100.0 35 ............................. TCTTCAGCGTCATTCGCTGTTGCATAATCTTTTGG 651622 29 100.0 35 ............................. TCATAGAAGACACAAAAATGGAAAATACTCACAAG 651558 29 100.0 38 ............................. ATCCATAATATCCACATTTGCCATCGAGCTTTTCTAAA 651491 29 100.0 35 ............................. ATTCTAATTTTGCAGTTGTTAGTCCTTGCAGCGAT 651427 29 100.0 34 ............................. AAACTTGCAAAACTCAATATATAAAGACCCTGTG 651364 29 100.0 36 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATAA 651299 29 100.0 36 ............................. AACACAATATTGTTCCAAAACCCCTCTGTCTAATCC 651234 29 100.0 35 ............................. GCTTTACCAGTAGCCCCAGTTTTTGTAATAACCGT 651170 29 100.0 37 ............................. TAACTTCTATTCTCTTACCGTTTTTTTCGTTAACACC 651104 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTATAAGCATTA 651039 29 96.6 37 .........................G... TTGAAATCATAATTATTAAATTTAGAAATGCACTCTG 650973 29 100.0 37 ............................. AAAACAAACCAACACCCATCGCAGCAGCAACCACCAG 650907 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 650843 29 86.2 0 ...............C......CC....C | A [650818] ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATAATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAATTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAATCCGTTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 669489-668616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJH010000001.1 Listeria marthii strain FSL W9-0631 NODE_1_length_917041_cov_46.221803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 669488 29 100.0 38 ............................. ACAAAATATGGTTACTACGGCAAGGAAGTAACTACTAC 669421 29 100.0 35 ............................. ATGCCTTGTGTCCCAGTTAACGTAAGGACTTGATC 669357 29 100.0 35 ............................. AAAGTAAAAGCCGTAGAAACGTCCTCACAACCTCA 669293 29 100.0 35 ............................. TTTGTAAAATAAGCACGGAGGGAAGCACTAACATC 669229 29 100.0 37 ............................. AATGGTATAGCCCGGGGACAAAGCTATCTTGGTATGA 669163 29 100.0 37 ............................. TATTGTACATTTCATATGACATATCGGAATCCTCATA 669097 29 100.0 34 ............................. TATTCTGTTAGTGTTTTAGATGCTTTTTTAACAG 669034 29 100.0 37 ............................. ACAAAATACTTTTCGCAGAATTTTATTGCATAGTTAT 668968 29 100.0 36 ............................. AGTCTTGACACGTGCCAATAGTATTTTCCCAAGAAA 668903 29 100.0 36 ............................. AAGTCAATTAAGAAAGCTGTTAAGAGATACAAGACA 668838 29 100.0 34 ............................. GCCAAGAAGTTTCATTTTTTAAAGAAGCTTTCGT 668775 29 100.0 36 ............................. GTGATAATGTCGACACGTCCGATAGATCGAATAACG 668710 29 89.7 37 .A.....T......T.............. AGTTTAGATGCTTTGCTAAATCAGAAAGAGTTCATTA 668644 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 36 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : GCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAAGTGGGAGTGGTTGGGATTAGGGAAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TAATGTAAACTTTCTTGTGGGATTCCAGCTGTTTTCGGTTTTAAAGTACAAGGAATGACATTATAAATGTGAAAAGAAAAAATCCAACTATATCCACACCCAAATCATCCATATAATCAAAAAAAGCGTGACTGCCAAACTAGCAGTTACGCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTCCTCTTCGGAAATAAAATTATATGCTTCCACTTCTCCTAAATTCTCAAAATCCGAAAGAGTAGCTCCCGTTTCTTTCAAATCTTCATTAAATTTCCCGTAGCTCATACTAATTATCGAACTTAGTTTTTCACTGTCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCCTTCTCAAGCGCGATATAATTCTCAATAGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAGACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //