Array 1 97585-97918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFH01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM N44699 N44699_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97585 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 97646 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 97707 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 97768 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 97829 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 97890 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8513-7326 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFH01000013.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM N44699 N44699_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8512 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8451 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 8390 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8329 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8268 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8207 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8146 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8085 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 8024 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 7963 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7902 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7841 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 7780 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7719 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7658 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7597 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7536 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7475 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7414 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7353 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGTTGATTGATCGTTATCAATGGGGAAAGAGAT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //