Array 1 2015652-2018074 **** Predicted by CRISPRDetect 2.4 *** >NC_019673.1 Saccharothrix espanaensis DSM 44229, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2015652 37 100.0 35 ..................................... TCCGGGTCAAGGCGTACCCGACACCCGGATGGTGA 2015724 37 100.0 35 ..................................... CCTGGTCGGGACCCTGGACCGTCAGTGCGGGGCGC 2015796 37 100.0 36 ..................................... GCCTTCGCGATCAGCGCCTCGGCTTCGACCATGTCC 2015869 37 100.0 34 ..................................... TCCCCGTCCATGCGTGGGTGGACGCACGTCAGCC 2015940 37 100.0 35 ..................................... ACGGGTCGTTGACGTTGACCGCGGCGTCGTCGGAC 2016012 37 100.0 37 ..................................... CGGTAACCCTCAGTCGGGTGTGAGCATCGCGACTCGC 2016086 37 100.0 37 ..................................... TGTTCATCCTGGTCGACAACGCGGCCAGCCGCACGCA 2016160 37 100.0 35 ..................................... TCCGAGTCCGGCAACATAGCGATAAGCGACCGGGG 2016232 37 100.0 37 ..................................... TTCAGGTAACCGTGCGGGAACGGGGGGACGGCGAACA 2016306 37 100.0 37 ..................................... CTGGCGTACCGGCGTGAGATCGACTCCCGTCCCTCCT 2016380 37 100.0 34 ..................................... GACGGCGGCTTCCGGCACGCCCGCAAGTGGGTGG 2016451 37 100.0 33 ..................................... CGGAAACCCGGAACGGGTCGGGCAGGTGGAGCC 2016521 37 100.0 36 ..................................... TGTGTGCGTTCACCGCCCCTGCTCTCCCTAGCGTGG 2016594 37 100.0 37 ..................................... TTGGCCCCGAGTGCGCCCTGTACGTGGCCGTAGAGAC 2016668 37 100.0 34 ..................................... GCGATCGTCCACAACGGCCGGCGAACGGCGGCCC 2016739 37 100.0 34 ..................................... GACTACCTTCGTTTTGATGCATCTCCGGGTCTGG 2016810 37 100.0 35 ..................................... GAGTTCGCCGACCTGACCGAGGTGGAGTTCGGCGA 2016882 37 100.0 36 ..................................... GCGTGCAGGGTGATGGTCCCGTCGTCGTGCACCACG 2016955 37 100.0 36 ..................................... CAGGAGGCGCGGCTGGATCACCTGTCCGGGGTCGCG 2017028 37 94.6 34 .............T.T..................... GCGAACGCCTCGTCCGAGGCCTCGCGGAACGACT 2017099 37 94.6 34 .............T.T..................... CTGCTCGACCGGCCGCAGGCACTCGACCGGCTCG 2017170 37 94.6 35 .............T.T..................... GCTGGCACGGTGACCGACGAGCGCGCGTGGCTGGC 2017242 37 94.6 34 .............T.T..................... TACGGCAGGGCCGTGAACGACCACACCAAGGAGG 2017313 37 94.6 36 .............T.T..................... CGCTTTCCGGTTGCGTGCACGCCGCGTGAGCGGACG 2017386 37 97.3 35 .............T....................... GGCGCGTTGTCGACCTTCGGGTACGCACAGTGGGT 2017458 37 97.3 34 .............T....................... GACCGGGCCGTCGCAGACCCGGTGCGCGCAGTCG 2017529 37 97.3 36 .............T....................... ATCGGCGAATCACCCACCCGCGGATCGGTCGGGTTG 2017602 37 94.6 35 .............T.....C................. GAGGTCGACTTCGAGGAGCTCACCCGCACCAACCG 2017674 37 97.3 36 .............T....................... CGCTACCGGCTGCCCGAGGCGGGGCGGCTGTGGGAC 2017747 37 100.0 36 ..................................... CGGTCCGCCGACGCGGCGGAGGTCGGCCGCCTCATG 2017820 37 100.0 37 ..................................... TTCGGGATGTCCTGGATCGCGCGCACGTCGTCGTTCG 2017894 37 100.0 34 ..................................... CCCGACGACCCGTTCATCCGCGAGATCGACGAGC 2017965 37 91.9 36 .......C.....................GG...... CTGCACGTGTTGGACGGGGCCTGGAACGTCACCAGC 2018038 37 86.5 0 .........A.G.....A.G.......A......... | ========== ====== ====== ====== ===================================== ===================================== ================== 34 37 98.1 35 GCAGCGCTGGAAGCCCGCTTCCAGCGAGGATCGCAAC # Left flank : CCGTGTCCACGGGTGCCACCGCTCAGCCAGGCGGGCAGTCGGCGTGCATCCCGTGCCCACGTTGTAGCCGTCCACTACCTCGCCAACGGAAAGTGCTGTCGGAGTGGCTCGGGTTCTCCGGAGTTGTCGCCTCGGTCGTTCCCGGTCACCCGCGGAGCGTCCGGTCGTGGTGGGTGAGGAGCATCGACGGCACGTCGGGAGGTGCTGCACCTCCCAACGGCTCGCCACCGGGTGACCTGTGAGGTGGTGGTAACGGCGAGCCGTTCGTGGTGGACACCGGTTCGGTTGTGGGATCGTTGGGTACCGCAGGGTCCGGATACGTCCGTCACCTCCCGTTGGTGAACCTGCTGGTTTCGGAACCGGCGTGTGGTGCTTCGGAACCTCAAGCGTGACGTGACACGCCGGGAGGTTCCGAAGCCGGCGCCGGCGTGTCATCCCGGATACTGGTACTTCGCAAAGTCCTCGATTCGTCATGACGCTATTTCGCCTGGTCATCCAGG # Right flank : CCGATCTGGGTGCGTGGGCATCTGCAGCCTGCTGGGCCACAGTTCGGATCGAGGACCGCGCCGGTCGCGGCCTCACCCGCTGCCGGGTCGGCGCCGGCGGTGCCCTGACGGCGGACGACCGCTGCCTGACCCTGCCCACAGGCCGGTCGCGAGTCAGTCAGGGTGTTCCGCCCATCGCCGAGAGCGTAAGCAGTGGGGCGGGGCTGGGTCGTGTACACGGCACTGACCACGCGGTTCAGCGTGTGATCGGGGATCGTCAGGGCGATGGGGAACCGGTCGATGTCCATCGGTTCGACGATGGGATTACCCCGCCAGTAGGTATCGCTATGCAGCGTGTGGTCACCGCGACGGTAGTTGCAGTGGCGCCGAGCCGCGCAGCCCCTTTGCGCGTCCATGACGGAGCGCAGTCGTCGAGCGGCTGCTCGGGCCCGTCGGCATCAGACCCCATGAGCAGGTCGCTCGCCGTGCGCAACATGAGTACGGCATCGATGGCGGGTGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGAAGCCCGCTTCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 2035718-2033671 **** Predicted by CRISPRDetect 2.4 *** >NC_019673.1 Saccharothrix espanaensis DSM 44229, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2035717 29 96.6 32 ............................G CCGTGCACGAGTACCTACGCGGCGCCCGGGAT 2035656 29 100.0 32 ............................. GTCCTCGGCGGGGCCCACGTCGTCGGGATCGA 2035595 29 100.0 32 ............................. TGCCGCTGCCGTTCCGGGCTGTGGCTCGGAAG 2035534 29 96.6 32 ............................T CACCCACACCGCAGTCCTGTCCGACGGCCAGC 2035473 29 100.0 32 ............................. GTCTTGATGAACTCGTCCGGGCTCATGCCGGG 2035412 29 93.1 32 .........A..................G TCCACGTGCCACTCGCCGGGGACATAGCGCGC 2035351 29 96.6 32 ............................A CCCCCAGGAAGATCACCAAAGTTACGCCGAAC 2035290 29 96.6 32 ............................A CCGGTCTGGTCGTTCGCGGACGCGGCCATGCC 2035229 29 96.6 32 ............................G GTCTCGACCTGCGAAAAGGCCCCGCCGGGTGG 2035168 29 96.6 34 ............................G GAGAGCCCCGCACATGCCTCGTACTCTCGTTGCC 2035105 29 100.0 32 ............................. CCGCCTCACTCCGCGACCCGCTGACCTTGTGG 2035044 29 100.0 32 ............................. TCAATCCCCAGCGCTTCGGCGTCGGTCCAGTG 2034983 29 100.0 32 ............................. GTTCCGGGCCGGTCGAGCGGTTTGGTGACGAT 2034922 29 93.1 32 ........T...................G GCCGCGCCGGACTCACGCGTCGCCTCGCGGAA 2034861 29 96.6 32 ............................G TTCACTGTCGTAGCGCCGATGACGGTCGTGAC 2034800 29 96.6 32 ............................G TCCTCCAGGTCCTTGTCGGTCGCGGCCTCGAA 2034739 29 100.0 32 ............................. GGATGGCCTCACTGCGGGTCTCGTAGAGGCGT 2034678 29 100.0 32 ............................. TCCGTGTCGCCCTCCCCGACGACCACAGCGAC 2034617 29 100.0 32 ............................. ATGTCGCCGCGCTCGTCGCCGTTCATGCTGCG 2034556 29 96.6 32 ............................G TCGGCACCACCCTCACCCGGACCCGACCGGCA 2034495 29 96.6 32 ............................G CGGTCGCACCGGCCGTGGCGCACAAGCTTGCG 2034434 29 100.0 32 ............................. GAGCGCAATACCCTTCGTATGCATACCAGCGA 2034373 29 100.0 32 ............................. CCCACCAGCACCAGCGGGATCACCCGCGACCG 2034312 29 93.1 32 ........T...................G GTCGGCCGGGAGCTGTGGCTGCACCACAGCAT 2034251 29 96.6 31 ............................A GTTCGCCGAGCTGTGCGACGTCTCCCCGCAA 2034191 29 100.0 32 ............................. TGCCTGCGGTTCAGCGGCTCGGATGGCGTCGG 2034130 29 100.0 33 ............................. CAGAACTCGTAGTCGCGGCAGTCCCACTCCCAC 2034068 29 96.6 32 ............................T GCCGTGGTGGGGGCGGTTCGATTTGGGCTGCC 2034007 29 96.6 32 ............................G CCAGCCAAGACGGCCACGCCGCCAAGACCATG 2033946 29 93.1 33 ......T.....................G GTGCGCCGGCGGATATCCGGCCCACCTCCGTAC 2033884 29 82.8 32 A..........T.A..T...........G CCAGGGTTCTTCAACCCGTGCGGCCTCAAGGT 2033823 29 82.8 33 .....T...A....G.......C..C... TGGGCGGCGGCGGGCTGCTCACCGGTGCGATGC 2033761 29 86.2 32 A..................AA.......A TCCAGAGTCTGGAGCAGGCCGGGTCCGACGTG 2033700 29 82.8 0 ...G.TG.....T...............A | A [2033675] ========== ====== ====== ====== ============================= ================================== ================== 34 29 96.0 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : ATCATGGTCCACCACGCCGACAACGAACAAGGCCTCGACTTCACAGTCCACGAACACAACTGGCACCCCGTCGACTTCGACGGCGTCCAACTCATGCTCCGGCCCCACCACGCCACACCCGACGACCCCGACACCGCGCCCACCAAGAACTGGAGCAACGCCGCCCGCCGACGCCGCTACGGCAAACGCTGACCCTGGCCTCGTCCGCACCCACCCTGCCGAACCACAGCACACCGCACACCAGACAACGCTTCCGACCATGCTCAAGCACCCCTTGGCAACAGAGCGTCGGAACGCCACCACAGACACCCCTGATCCGCCCGAACCACCCAGGCGAACAGCCAAGTCATCACGGCCCGGCGAGCTGGCCGGGCCGCAGGGCTCGAACGTCGGCAAGCGGTCAGCCAGACGCGCACACCGGACGGGACAAACCATTCCGAGACAGGCGTGAACCGAATCAAAACACGCGGAGAACGCCACAAATCCCCTGGTCAAGAAGT # Right flank : AACTTCCGACATTCAGCGTCGGTGACTCGGCCGTCTTCTCCGCCCACGCAAGCTCCTCGGAGACCAACGAATCAACGACTCAGGACACTAGCGGTTCGGACCTGACGACGCACGCGTCGAGTCGACCAGCGCCCGGTTGAGTTCACGGCGTTGGGCCCGTTGCGCTCGTGGCAGCGCACCGGTGGCCGGGCTCCGTCTGCGTGCCGGACATCCGCCGAGAAGTGTGTGTCTACCGCGACGCCGAGAGATGTCTATGTACACCACTCCAATCCACGCGACAAGGAAAGAAGCAGCTCAAAGGCGTGGACCAGCGCGACCATCTATGTGTGAAGCAGGTCATACGAGTTGACCCTACGATGGCGAGCGGCGCTGGTCGGCGAGTTCGACCGGCGCTCCCTGGCCTTCTGTTGGTAGCGGTTGAGCACAGGGTTTGGCGGTTCTCGCTGGAGACGAGTTCCGCCATCAGCTTCCGGCCTCGGACGGCACGTCGCCGTCCGAGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2048888-2046164 **** Predicted by CRISPRDetect 2.4 *** >NC_019673.1 Saccharothrix espanaensis DSM 44229, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 2048887 30 96.7 31 .............................G CACCCGACGTGCCCCTCGCCGTGCACCGGCT 2048826 30 93.3 31 ....................A........T TGCAGACCACCAGCCGGGCCGGCCAGATCGA 2048765 30 96.7 31 ............................C. TGCTGCGCTACGGCTACGACTACCCGCGCAC 2048704 30 93.3 31 ............................CG TGACGGCGGCTGCGGTGGCGGCCGGGTCGGG 2048643 30 96.7 31 .............................T CGACGGTCCACCATCGACGCCACGTGTCGGG 2048582 30 100.0 32 .............................. TGACGATGAACTGCCCGCCGGCGGTGATCTCG 2048520 30 93.3 31 ............................CA GCGGCGTGATCCGGTCCGTCAGCGCGAGGTG 2048459 30 100.0 35 .............................. TTGTGCGGGCGCGGGTAGTCGCGGGCGTGCTTGAA 2048394 30 93.3 31 ............................CA CCGAGGCGGTGGCGCGCAAGGCGCGGCACGA 2048333 30 96.7 31 .............................T TCTGGCGCGACACGGTCGCCCACCCGAACTG 2048272 30 93.3 31 ............................CT CGCCGACGAGGAAGAGACGCTGGCCAAGGCC 2048211 30 100.0 32 .............................. CCGCCAACCTCAAGGGCTTGGTCGGCGACGTG 2048149 30 96.7 31 ............................T. CGCCAACCTCAAGGGCTTGGTCGGCGACGTG 2048088 30 96.7 31 ............................T. CGCCGCGGCCGCTGCCGCCGCCTGCGTCGCG 2048027 30 96.7 31 .............................G CCGGCCGGTCTGGGCGGTCACCTTCACCATC 2047966 30 96.7 31 .............................T CGGTCTGGATCGTCGTGAGGTTCACGCCGCC 2047905 30 96.7 31 .............................G AGCCCGCCCGTGATCCGCAGTCAACCAGTCG 2047844 30 93.3 31 ............................CA GCGCGACCAGAACGCAGCACCGGCGGCCGCC 2047783 30 93.3 31 ............................CG CGCGTGTTCCGAAGGCCGAGGCACAACGTTT 2047722 30 96.7 31 .............................T CTGGGCACCCGCCATAAAGCATCAACAATCC 2047661 30 93.3 31 ............................TG GAAGTGGGCCACCGTGTGGCGGCCCACGGCG 2047600 30 93.3 31 ............................CG GCTGGCGCTGCCTGCGCCGAGGCGTCGCACG 2047539 30 90.0 31 .....................A......CA GCCCGGTTGCCGTGCAGGCACCCGCCACGAC 2047478 30 96.7 31 .............................A AGCTGGCCGAGGCGTGCGCATCAGACCCCGC 2047417 30 93.3 31 ............................CG TCGTCGTCTCCCCGCCACCTCGGCCGCCGGG 2047356 30 100.0 31 .............................. CAACCTCGCCGCCGGACAAACCGGCCACCGC 2047295 30 100.0 31 .............................. CAACCTCGCCGCCGGACAAACCGGCCACCGC 2047234 30 100.0 31 .............................. CAACCTCGCCGCCGGACAAACCGGCCACCGC 2047173 30 100.0 31 .............................. CAACCTCGCCGCCGGACAAACCGGCCACCGC 2047112 30 93.3 31 ............................CA GGTGCTGCTCGAACGGGCGGTTGGACCACAG 2047051 30 93.3 31 ............................TA CTACGACGCGAATTTGGCGGTCTAGATGGCA 2046990 30 96.7 31 .............................G CCCGACTGACCGGGGCGGCCGGGCTCACCGG 2046929 30 96.7 31 ............................T. CGGGTCATCGCCCCGCCTCCTCGTCGCCACC 2046868 30 93.3 31 ............................CA CCGCGCTGAACTCGCGGACCCGGCCTACCTG 2046807 30 93.3 32 ................T............G CCGCTCACAAGCTCGTGCTGGGCACTGGGCCG 2046745 29 96.7 31 .................-............ AGCGGCGACGAGAAGAACTTGACCTTGCGGC 2046685 29 96.7 31 .................-............ GCGCGCCTGGTGCCGGTCGCCAGGTCGACCG 2046625 30 96.7 31 .............................G GTCTGATCCCCGGATTCGAGGGCCACGCGGA 2046564 30 86.7 31 .............G...........C..CT CGGGCCCGGCAGGCGCGGCGGTGCTGCCCGT 2046503 30 100.0 31 .............................. CCTCGTCGCAGTGCAGTCGCAGGGCTGCCTG 2046442 30 90.0 31 ...........AA...............C. CGTCCCCGGCGACGAGGACCAAGGCGCCAAC 2046381 30 90.0 33 .....................A......CG CGCGGCGGCCTCGTAGGCGGTGGCGCGTTGTCC 2046318 30 83.3 31 .........T....G......A..T...C. AGATCGCGGCGCGAGGCCCGGCACGGCTCGG 2046257 30 83.3 33 ......T.......G......A....T..G ACCCGTACACGCTACGAAGTCCGGCAAGGCGAG 2046194 30 70.0 0 .C...G.G.....GG.....CA.C.....G | A [2046178] ========== ====== ====== ====== ============================== =================================== ================== 45 30 94.4 31 GTCTTCCCCGCGCACGCGGGGGTGGTCCGC # Left flank : ATCAACACCCGCGAAGAACTCCCACACCACCAACACATCCCACCCTGCTGGCACCACCACGGACGAGCAGTCGAAGACCTCACCGCCCTCTACGCCGCCTGGCAGGACGCCTACTACGACACCAACGGCCCCACCTCGGCTCTTATCCACTACCGCGACCGCTGGCTCTGGCCCACCCTCACCCGCCTCACCGACACCAACACCCCTCTACGCCGCTGCATCGACAAGAATCAGCACACCCCCTGGTACGAACCCACAACCACCGACTACCTCGACACCGACGGCCACCTGTACGACCGCAGCACCCAACTCACCGACCACGTCACGCGGGACATCACGACACGCCCACACGTCCTACCGGATACCCCCAGGCACGCAGAGTCGATCAACCAGTGACCTCCCCCGGACAACCGACTGACAGCCACACCAGACATAAACGAGACCACAATGTACAGAATCAATACTAGCCGGTAGCCCTGTAACCTCCCAGGTCAAGAAGC # Right flank : ACAGCCTTGGTGGCCCGGTTCGCGGATTGGACCGGCCCGCGTTCTGGTCTTCATCGTGTGACCGGGGTTCGGATCGATCGTGTGGCCTGTTGATGTACAGCCTGGCCTCCCTCGACCAGAGCGGGGGTCGGGCCCGCTGCGGACTGGCGCACCTCGTCTTCCTTGCGCATACCTGAGTGGTTCGTGTAGGAGACTCTCGCGGAGCGCAGCGTCTCCTATTAACCGTCCCGGTATCTCTCGGAACTCGACTGTCCCGAAACTCTCCACAGATAGGATGTCTCCAAGTTGCGGCACAACGCCTTTCCCCACGGAGACATCTCATCGCAAAGACACTTTCGCCGAAGAGTCGACACGCACTGATACGAGCCAATACCTAGTTCTTAAGCCGCAGGGCCGGTTTGCCTTGAACCGTCCGGCTCGATACAGTCACCGACCGGCCGACCGGTTCGTATAGATGGGAGATGCATAAGTCGCGGATAAGGCGCGGTGCGGTCCCGTTG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2095934-2096481 **** Predicted by CRISPRDetect 2.4 *** >NC_019673.1 Saccharothrix espanaensis DSM 44229, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2095934 37 100.0 37 ..................................... GCTGCCGTCGCGGACGTGGTCGATCGCGGTGACGCTC 2096008 37 100.0 36 ..................................... GACGACTCGCCGGCCTTCGGGCACGCCCGCCGGCTG 2096081 37 100.0 34 ..................................... GCCGAACGCGATGGTGCCCCGGTGGCGACGTGCT 2096152 37 100.0 36 ..................................... GGGCTCTTGGCCGGGTACCCGGGGCACTTGGTGAGC 2096225 37 100.0 36 ..................................... CCGGTCGGCCTCGACGAGCGCTTGGTCGACGATCTG 2096298 37 100.0 36 ..................................... TATGTGCCGTTCGAGGACGGGGCGGACATGGTTTCC 2096371 37 97.3 37 .............................G....... TTGTAGTTTTGGGCCTCGTCGACCACCACGAAGTCGA 2096445 36 83.8 0 ..........A...........G.T.....-....CA | C [2096458] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.6 36 GCAGCGCTGGGAGCCCGCTTCCAGCGAGGATCGCAAC # Left flank : CCCGACCGACCTGATCTATGGAAGTAGCGCCGCTCGGCGACATCATGCTTTCCGGGATCCACACACCGGCTCCCTGCGTCGTACCGAGCGCAGCGAAATCCGGGCTGGCTCCCCACCTCGTCGCGATAACGTGGAACGGTGCCCTCGATGATATCCCGGAGATGCAACATCGAGCCCAACAAACGCCTCCCCGTCGAACAGTCAGTCCTGCGGCGGGCCTCGTGAAATCCTGTACCCGAGCGGAGACACCCGGACCGCCCGAAGCAAGGCCCGTCGTACCTCGATGCTGGGGCTGATCTGGGCGTGAGAGTGTGGCCGGGACTTGGGCAATCCCCACCGTGGAACATGCGAGTTACGGAACTGGAGCGATGCGCTTCGGAACCTCAAGCGTGACCAGACACGCCGGTACGTTCCGAGGCCAACGTCGGCGTGTTATCCCGGATATTGGGACCTTAAGCGAGGTCACTTCGCGACAGGGCAGTTTTCCCTGGTCATCCAGG # Right flank : AACATGATCAGGTTGTCTGAGAATGCCGCTGTCAACAGGCAGCGTCGCTAGTACGGAGAGGTACCGTTGGATCGAGTGGATGTCCAGATCGGAAAGACTCGAGTCGTGGACACCTTTACTCGGCCTAGTACACTAGGCCACGACCTGGAAGAACAGGCCCGAGCACGTCGCTCAGTCGTTCTGCGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCGTCCCGACGGCTGTGACCAGCGGGTTCACCATGATGGTGAACCCGCTGGTTTCGTTTGGGGCTTATGTGATCGCGGTGTGGTCTCCTTCGACCCTGCGTGCGGCGTCGGCTGTGTCGAGGGCGTTGGCGATGACATCGGCGGCGTCGTGTGCGACGTGGCGCAGTAGGTGTCCGTAGACGTCGGTTGTGGTCGCGAGGTTCGAGTGGCGCATCGCTCGGGAGATCACGGCGAGCGGGACGTTCGAGTTGAGCATGGTGGTCGCGGCGAAGTGCCTCAGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGAGCCCGCTTCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //