Array 1 465252-466541 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTHP010000003.1 Listeria innocua strain FSL W9-1319 NODE_3_length_471918_cov_100.431777, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    465252	    36	 100.0	    31	....................................	CTAATTTTGTAAATCCGTTCTTCATGGTCAA	
    465319	    36	 100.0	    30	....................................	CTTACAAATTCCAAGCCTTACAAGTGAACT 	
    465385	    36	 100.0	    30	....................................	TTAATATTAGTATTTTTCACAGGCGTGGCT 	
    465451	    36	 100.0	    30	....................................	GGAAAAACTGCTTCAATTGATCGTCATACT 	
    465517	    36	 100.0	    30	....................................	ATGTAAAAACTTTTGACGGTCAAAGAATGG 	
    465583	    36	 100.0	    30	....................................	TCTTTTTTAAACCAATGATAAGGACTGTCA 	
    465649	    36	 100.0	    30	....................................	TAATGCTAAAACAGTAAAAACCGCATTCCA 	
    465715	    36	 100.0	    30	....................................	ATTAACAGAAGCGGAAATTAAAGGTATGCC 	
    465781	    36	 100.0	    30	....................................	CTATGTCCTTTCCATTACAAATTGTTTCTC 	
    465847	    36	 100.0	    30	....................................	AAATACAATCATCAAAAACAAAAATAAATT 	
    465913	    36	 100.0	    30	....................................	TTACAGTAAATCTTTCATTGAAAATCACGT 	
    465979	    36	 100.0	    30	....................................	AACTTATTTTTATGCCGAGTTACGGAGTAG 	
    466045	    36	  97.2	    30	............A.......................	CCTACTAATCCTTCATCGATATAAAAATGC 	
    466111	    36	 100.0	    30	....................................	AATAGTTGCTGAAAATAAGAAAGATCCTCG 	
    466177	    36	 100.0	    30	....................................	AAACGTCAAAGGGTTATTATCGCACAACAA 	
    466243	    36	  97.2	    30	..................................G.	AATTGATTCTCAAGATAATACATCGATATA 	
    466309	    36	 100.0	    30	....................................	TTTTCATTTTCTCAATTAAAGATAGTGCCG 	
    466375	    36	  97.2	    30	...............A....................	TCTTAGAACAGAGCCATGGGACTCACTAAT 	
    466441	    36	  97.2	    30	...............A....................	GGTTTATATTTGGTATAGTGAAAAATAAAA 	
    466507	    35	  88.9	     0	..............C..........A....-...C.	|                              	
==========	======	======	======	====================================	===============================	==================
        20	    36	  98.9	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                               	       

# Left flank :   TGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG
# Right flank :  CCATCTCTCAATCCACTCCAGCTAGAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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