Array 1 987639-989618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065572.1 Salmonella enterica subsp. enterica serovar Albany strain R16.1424 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 987639 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 987700 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 987761 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 987822 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 987883 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 987944 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 988005 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 988066 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 988127 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 988188 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 988249 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 988310 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 988371 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 988432 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 988493 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 988554 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 988615 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 988676 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 988737 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 988798 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 988859 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 988920 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 988981 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 989042 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 989103 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 989164 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 989225 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 989286 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 989347 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 989408 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 989469 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 989530 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 989591 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1006176-1009074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065572.1 Salmonella enterica subsp. enterica serovar Albany strain R16.1424 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1006176 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 1006237 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 1006298 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 1006359 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 1006420 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 1006481 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 1006542 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 1006603 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 1006664 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 1006725 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 1006786 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 1006847 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 1006908 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 1006969 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 1007030 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 1007091 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 1007152 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 1007213 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 1007274 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 1007335 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 1007396 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 1007457 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 1007518 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 1007579 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 1007640 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 1007701 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 1007762 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 1007823 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 1007884 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 1007945 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 1008006 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 1008067 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 1008128 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 1008190 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1008251 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 1008312 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 1008373 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 1008434 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 1008495 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 1008556 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 1008617 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 1008679 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1008740 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 1008801 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 1008862 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1008923 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1008984 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1009045 29 100.0 0 ............................. | A [1009072] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //