Array 1 18348-18121 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQL01000004.1 Bacillus sp. NMCN1 NODE_4_length_324741_cov_60.5691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18347 32 100.0 32 ................................ TTTCTCCAAATTTCGAATCATGTACAGTTAGC 18283 32 96.9 34 .......................T........ TTTTGGCTGGTTCATCCGCTCCGCCCCGCTTCCA 18217 32 100.0 33 ................................ AACTGGTCTCTTATTCCATCAGCAAAGTATTTA 18152 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ================================== ================== 4 32 92.2 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TATGAGTGCGTGGATTGAAATATACTGGCCTTGATCAGAGGCACGTCATAATAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACTGGACCTGCTTTGTATGGATTCACTACAGTTTGTCGCACTCTATATGAGTGTGAGGATGGAAATTCTCGTCAGTAGATAGCTTTAAAGATATATTGACAATTGCGCTTGATATAGGTATGAAAAACATGACTTACTCAGTAGTCATATGTTTAAATGGATTCAAGTCTGTTGATGAAACAGTGAAAATAGGTATGATTTTCAAGAGCAATAGTTTTTAATTAAATAGGGTTAAGAAATATTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAACATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTCTGCGAATTACATAAATTCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGTCCAACATGGAAAGAAGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCGAAATAATAATGTCTTCAATTTCATCGAATCGTGCACGCA # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18992-18696 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQL01000004.1 Bacillus sp. NMCN1 NODE_4_length_324741_cov_60.5691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18991 32 96.9 33 ...........C.................... TTGCAATTTCCAGGAGTCTCTCAGTCTCTTCGC 18926 32 93.8 36 ...........C....A............... ATTATCCAAGTCCTCCCATCAACCCAGCGACAGCAA 18858 32 100.0 33 ................................ ATACTGGCCTTGATCAGAGGCACGTCATAATAA 18793 32 100.0 34 ................................ ACTGGACCTGCTTTGTATGGATTCACTACAGTTT 18727 32 90.6 0 ...................T.A....G..... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGTGTCAAGCTAGATAAGATGAACAAAGAGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCTATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATGAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAGAATGTATATTTTTTAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGCTCATTCCCTAAAAAATGTTATAAATAGGGCGGAAATTGCA # Right flank : TCTCGTCAGTAGATAGCTTTAAAGATATATTGACAATTGCGCTTGATATAGGTATGAAAAACATGACTTACTCAGTAGTCATATGTTTAAATGGATTCAAGTCTGTTGATGAAACAGTGAAAATAGGTATGATTTTCAAGAGCAATAGTTTTTAATTAAATAGGGTTAAGAAATATTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAACATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTCTCCAAATTTCGAATCATGTACAGTTAGCGTCGCACTCTACATGAGTGCGTGTATTGAAATTTTTGGCTGGTTCATCCGCTCCGCCCCGCTTCCAGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 26974-26674 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQL01000004.1 Bacillus sp. NMCN1 NODE_4_length_324741_cov_60.5691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26973 32 100.0 34 ................................ ACGATTGACGTTAGTATGACAAAAGAGTGGTATT 26907 32 100.0 35 ................................ CTTTCACTTGAACGTTATCAACAATCCATCCACCT 26840 32 100.0 34 ................................ CGCAAAGCAGATGCCGAAACTTGGACGGCTTGGG 26774 32 100.0 33 ................................ GATTTCTTCGTCTGTTAAATCTTCATAGTATTT 26709 32 84.4 0 .......C...T............T..TC... | AC,G,A [26685,26691,26700] ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TCTATATGAGTGCGTGGATTGAAATAACGCTGAGGATGCACCAGAAGGAAAGAAAGACGCGTCGCACTCTACATGAGTGTGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTAACTTAAAGATCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGTTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27678-27317 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQL01000004.1 Bacillus sp. NMCN1 NODE_4_length_324741_cov_60.5691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27677 32 96.9 33 ...........C.................... TCATCGTACGCGTATATTGGCTTCATATGGTTT 27612 32 96.9 34 ...........C.................... AACTTAGCTCCACTCATAATCCACTTTCTAAAAG 27546 32 100.0 34 ................................ ATAATATTGCCCGATCCTGCATAGGCGTATCCTC 27480 32 100.0 35 ................................ AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27413 32 93.8 33 ...........C.......T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27348 32 84.4 0 ................A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGACGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCATGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACAGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGATTGACGTTAGTATGACAAAAGAGTGGTATTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTTCACTTGAACGTTATCAACAATCCATCCACCTGTCGCACTCTACATGAGTGCGTGG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //