Array 1 575-69 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQT01000034.1 Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 574 47 100.0 30 ............................................... TTGATGTAAAAAACTAAGATTAATCTTATT 497 47 100.0 29 ............................................... AACAAATCATACATACAAAATAAACACCT 421 47 100.0 30 ............................................... TTACACCTACTTTGTGTGAACTAGTTCCTA 344 47 100.0 29 ............................................... TCATAATATATCTCTTTTTTGATTACAAT 268 47 100.0 30 ............................................... ACTTTTTTCTAGAATAAAAAGTCTCAATAT 191 47 100.0 29 ............................................... TATCAATAACAGACACCTTCTACTCTTTA 115 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CCTTTCTACATCACTTAAATTGCATATTCCGGCGGATACCCGTTCAGCATTTCCGGTGATATCCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 72-1035 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQT01000010.1 Phocaeicola plebeius strain TF10-3AC TF10-3AC.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 72 47 100.0 29 ............................................... AAAATAATTATTTACATTATTCAAAAATA 148 47 100.0 29 ............................................... AAATAAAATCGCATATACATTGCTATTAA 224 47 100.0 29 ............................................... TTTTAACAGTAGTAGTAGTACCTTCAGCA 300 47 100.0 30 ............................................... ACAACCTACAAAAGATATACGTTATAATAA 377 47 100.0 29 ............................................... CTTAAACTAAAATATATATTTTCTTATAT 453 47 100.0 30 ............................................... TAAATGCACTAGATGCTAACCATTCTAACA 530 47 100.0 30 ............................................... CTCAGCTATAATCGAACAAATTCATACTTA 607 47 100.0 29 ............................................... TGAACTCGATACAATCAGGATGATTGCGA 683 47 100.0 29 ............................................... TCTATGCGCTTGTTATATAGTAATAAGAG 759 47 100.0 29 ............................................... CGAACTAACCAGAGCACAAGCGGCCAAGA 835 47 100.0 30 ............................................... TATCGATGGGCGCGGCTGTTGTTGTTTCAT 912 47 100.0 30 ............................................... GGGACACTGAATTTTGCCAACAATTATCTG 989 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : TTTATACCCTAATAAGCTGCCGGAAAGTGAACGGGTATGCTTCGGAATATGTACTTAAATCATACAAACTAG # Right flank : CTTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACTGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAGAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //