Array 1 62035-60253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJD01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2035 NODE_13_length_112953_cov_2.40855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62034 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 61973 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 61912 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 61851 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 61790 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 61728 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 61667 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 61606 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 61545 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 61484 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 61423 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 61362 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 61301 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 61240 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 61179 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 61118 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 61057 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 60996 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 60934 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 60831 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 60770 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 60709 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 60648 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 60587 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 60526 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 60465 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 60404 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 60343 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 60282 29 96.6 0 A............................ | A [60255] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79660-78167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJD01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2035 NODE_13_length_112953_cov_2.40855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79659 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 79598 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 79537 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 79476 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 79415 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 79354 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 79293 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 79232 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 79171 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 79110 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 79049 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 78988 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 78927 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 78866 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 78805 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 78744 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 78682 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 78621 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 78560 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 78499 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 78438 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 78377 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 78316 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 78255 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 78194 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //