Array 1 239318-239071 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030927.1 Streptococcus thermophilus strain CS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 239317 30 100.0 42 .............................. TATCAAATCATTCAGCAGACAATAAATATCATGACCGTTTCC 239245 30 100.0 43 .............................. AGTTTTCAATGATTCAAGTCTTGAATTTCGCTAAACAGTTTCC 239172 30 100.0 42 .............................. TTTCTAGGAATGGGTAATTATAGCGAGCTAGAAAGCGTTTCC 239100 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 4 30 100.0 43 GTCCCCTCTCGAGGTAATTAGGTTTATATC # Left flank : AAATAATTGAAAAATAGGTTTGATTTTCCTCACTATTGAAAATCTCTAACAGTTTATCTGCCCCCAACTCCTGAATCTCAACTTTTTCGACACTGAGTTTAGGCAGATCGTTTAAGGACACCTCTTTAATCTGTAATAAGGTCATAAAAACCTTATCCTCGAGGTCATCTGTGAGCAGATGTACAACCCACTGCGTGTTTTCTTTCCCTTGGATTACCTTGGTCGCATAGGGATTTGTTTGCTGCTGATGCAGATAATCAACATAGTCACTATCCAACTGCTCCATCAAGAAGCCATGAAATTTAACAGCCAAATCTTGTGCAGGATGGTCGATCCTTTTAAAAGTAAATACTAATTTTTTCATTCGACTCCTTCATCTTTGTATGAAAAAAACCCAAAAGCTGAAAGTACTTTTCAACTCATTGGGGCGCCCTTAATGTGCTTTTAGTCCAACACTTTCTGGAAGCGGTGTCAATAATGTTTTCAAAATTTTCAAAAAA # Right flank : CCCCATATCTTGTGCTCTAGGCAGTTGCTAGAGGCACAAGATGTAGGACCTACTGGAAACACTATCTATATTGTACCATATGATTAAAGGGTCTATAAAGGCTTAGAAGAAGAGAATGTCATCTAATTTTTCAGCACTATGGTAGGGGCTAAAACTAGTCACCTCTTCTTTGGTTGTCACATACACTATTATGCTGTCTTCTTCATCAGGCCTTGTAGAAGCCCTCGATATCCTTAAGGAGAGACTGATAATCATTTCTTGACAGGTCGACCTCGAAACAGGATTTTTGCACCCTCACGCCATAACCCTCAAGTAATTTCGAGAGTTTAAGTCTACGTTTGTTACTTCGGATATCATAAATAATCAGACAAAACATGGTTTTTTGTTTGGCAAACTCACGCTCTTCTTCGCTGAGGTTAAAGTAAAGTCCCATTAATGCCCTCCTGTGTAACTTGTCTCATAGAGACTAGGGTCAAGTTCTCTAAAAGCCCTAATCAAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCTCTCGAGGTAATTAGGTTTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 779934-779107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030927.1 Streptococcus thermophilus strain CS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 779933 36 100.0 30 .................................... ATATTAATAGCGATTCTATGCTACAACGTG 779867 36 100.0 30 .................................... TCATCTTCTAAGTAAATACCACTGTCAGGG 779801 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 779735 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 779669 36 100.0 29 .................................... TTTTCGCAAAGTAAGCGAAGCTCTACGTG 779604 36 100.0 30 .................................... TAATCACCCCTTTTTCTAGCTCTTGATTGA 779538 36 100.0 30 .................................... AAGTTGATCGTATCTATTTAGAATATCGCA 779472 36 100.0 30 .................................... CATAGTATAGCCGTCTTCTTTGATTGATTG 779406 36 100.0 30 .................................... ATTCACTTTGACAGATACTAATGCTACATC 779340 36 100.0 30 .................................... CAAGCAGTGTAAAGGTGGTTTAAATGTTAA 779274 36 100.0 30 .................................... CCATGGGTGCTAAAGGTGATGACTACCGCT 779208 36 100.0 30 .................................... AAATGAACAGACAAGAAGCAACAGAAATTG 779142 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACACTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTAAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1395230-1394006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030927.1 Streptococcus thermophilus strain CS9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1395229 36 100.0 30 .................................... CACTAAAATCAACGATGTTTTAAGGCAAGG 1395163 36 100.0 30 .................................... AAGTTTTTAAGTATCCATCTTCGTCGAACA 1395097 36 100.0 30 .................................... TTGATATTTACCTTTTGAGTAGGTATCTTG 1395031 36 100.0 30 .................................... CTAGGTCATACATATAAAGCAAACTATTGT 1394965 36 100.0 30 .................................... TATGGCATATAATCAGAAATACCATTACAC 1394899 36 100.0 30 .................................... GTTGAAGTATTTCGTTGTAACAATGACAAG 1394833 36 100.0 30 .................................... ATGAGGTGAAAATAAAGAGCTTGTGTTTCT 1394767 36 100.0 30 .................................... ACACATGTCTCTTCTTTCAACCAATATCGG 1394701 36 100.0 30 .................................... GTTACATTTATTAATACCAGTCATTGATTT 1394635 36 100.0 30 .................................... TGACTCTTTCTTTCTTATCTTGATACTAGT 1394569 36 100.0 30 .................................... TGCTCTAAAATCGTTCTACGAGCGTTTTAT 1394503 36 100.0 30 .................................... GGCTAGGAAGTACAAGTAACTATAAGAAAT 1394437 36 100.0 30 .................................... AGCCTTTAGCCATAGTTTTTACATGACCGA 1394371 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 1394305 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 1394239 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 1394173 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 1394107 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 1394041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //