Array 1 3452912-3452089 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAM02000001.1 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 gcontig_1112725669562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3452911 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 3452850 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 3452789 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 3452728 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 3452667 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 3452606 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 3452545 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 3452484 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 3452423 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 3452362 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 3452301 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 3452240 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 3452179 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3452118 29 96.6 0 ............T................ | A [3452091] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3470785-3469171 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAM02000001.1 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 gcontig_1112725669562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3470784 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 3470723 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 3470662 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 3470601 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 3470540 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 3470479 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 3470418 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 3470357 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 3470296 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 3470235 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 3470174 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 3470113 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 3470052 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 3469991 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 3469930 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 3469869 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 3469808 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 3469747 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 3469686 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 3469625 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 3469564 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 3469503 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 3469442 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 3469381 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 3469320 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 3469259 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 3469198 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //