Array 1 17313-18275 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRW01000002.1 Staphylococcus pseudintermedius strain MAD433 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17313 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 17385 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 17455 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 17527 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 17600 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 17670 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 17743 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 17814 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 17886 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 17958 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 18030 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 18101 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 18170 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 18241 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 27000-27321 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRW01000002.1 Staphylococcus pseudintermedius strain MAD433 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 27000 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 27071 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [27086] 27146 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 27215 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 27288 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 89428-90476 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRW01000002.1 Staphylococcus pseudintermedius strain MAD433 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 89428 36 100.0 36 .................................... ATTTTCTATCTTACAATTTAATAATAACATGAAGCG 89500 36 100.0 36 .................................... GATTTTAAACGAGTTTCTATATATAATTCATCTAAA 89572 36 100.0 36 .................................... ATCCAAGTCATCATCGCCAATCATAAAATAATCCTC 89644 36 100.0 36 .................................... TTTTATTTTTATTAAACATTTCCGCTTTCTCAAGAG 89716 36 100.0 38 .................................... ATAATTACTGTCATCAATGTCTCGTAAGTACATACTAT 89790 36 100.0 36 .................................... CGTTCATTTCGATATTGTTTATTACGTTTTTCATTT 89862 36 100.0 38 .................................... CGTACAACCATTTTTAAATGTTGCCCAACCCGTTTTTA 89936 36 100.0 34 .................................... AGCTAACATATGAAATGCATAAATAATTTCTTGT 90006 36 100.0 36 .................................... CATATTTTCGTACCCTTTATAAGTTTTAAAGTTGTC 90078 36 100.0 35 .................................... TGTTCTCCTCTTTGTCTATGTGTTTTCTTTATATT 90149 36 100.0 35 .................................... TGCTACCTTCCGCTCTGTATGTTTTATTCATGTCT 90220 36 100.0 36 .................................... TTCTTTAACAGCTTCATCTGACAAATCGTTATACGG C [90233] 90293 36 100.0 36 .................................... TTACTCATTTGTGATTTGAATGCGCCTCTTAATTCT TA [90315] 90367 36 88.9 38 G...G....A.T........................ CGTCGAAAGTATCTTCAATATTTAAAGTAAAGTTTGTC 90441 36 88.9 0 ....G......A....G............T...... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 98.5 36 AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGCGGTTTTGGCAATTTAATAGGTGATGGAAATGTCAAGGCACAATGCATATTCCGATTAATTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCTACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //