Array 1 34501-33407 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000029.1 Streptomyces anulatus strain JCM 4721 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 34500 29 75.9 32 ACCA.......C.....C..A........ GCGGGCCGGGCCTGGCGCGATGCGAAGAAGAC 34439 29 93.1 32 ...........G.......A......... CGCACCACCCGACGAAACCGCCGGACGCATTT 34378 29 82.8 32 TC...........AT.............G GAGACACAAAGTGACCGACGCTCAGCCCTACG 34317 29 86.2 32 ...........G...A.G....C...... TGCGCCCGGGACGCACCGGCCTGCGCTGTGGC 34256 29 93.1 32 ...........G.....G........... CCTTGTGGAGGAGCAACTCTGACACCCTGGGA 34195 29 86.2 32 ...........G..T..G.......C... GCCTGCTGTCCTGCCTCGGCCTCGCGACCCGG 34134 29 89.7 32 .................G..AC....... TCCCTGGCCACCGACTGGTCGTCGGTGCTCGT 34073 29 100.0 32 ............................. CAGCTCATGCAGCTCGCCCAGCTCGGCGGCGA 34012 29 86.2 33 ...........G.....G......A...G GTGCTGCCCGTCACCCGGGCCGCCACGGTCGTG 33950 28 89.7 32 .............GT..-........... CCTGAGCTGACGAACGCGGACGTGGCGGAGCA 33890 29 86.2 32 ....G........GT..G........... GGGGGCCGATGGTTGTATCCCATCGGCCCCCA 33829 29 100.0 32 ............................. GACGACCGGCAGACGGCGTACGCCCTGTTTCG 33768 29 82.8 60 ..............A..G.A...A.C... ATCTACCGGCACGGCCTCAACGCGAAGCACATCTGCTCCCCGGTCCTCCGTGGGCCCCGA 33679 29 93.1 32 ...G.............G........... CAGGGCGCGCGGTCTGATTCACCGTTCCCAGT 33618 29 93.1 32 .................G.......C... TGGTCGCGGATCTCCGTGTTGAACGTGGACCC 33557 29 89.7 32 ...........G..A..G........... CGCGCCGTCGCGACGGCCGCGTAGATGTCGCT 33496 29 89.7 32 ...........G..A..G........... GCGAAGTACGTTGTCAACGACCTTCGTGCGGC 33435 28 79.3 0 ...........G.G...GA..-....G.. | C [33411] ========== ====== ====== ====== ============================= ============================================================ ================== 18 29 88.7 34 CTGCTCCCCGCACCCGCAGGGATGGTCCC # Left flank : CGGAGCCCCCTCCGGACCTGGAGCCGCAGCCGCGCCCGGAGCCACGTTCGGAGCAGACCGTAGCGGACAGGATGCTCAACCAGCACTGCTCCACCCCTGAGTGGAGGCGTGCTGGAACTCTTCGCAGCGCTGAAGCAGAGTGGTTGGCGTTGCGTGCGCCTATGGACGCATTCTCCGAGCCTCTAGAGATCGCAGCTGTTTCGCCTTCGGGGGCCGTCCTCACGGCTTGGGCGCGGCTGGAAAAGGTCTGCCTGGGAAGCCGAAGCCTGCATGGATCAACTCCTCGGGGCGGCACCAGCACGCTAATGCGGCAAAGGCTCCGCGCGGCAGGGGCACCCAGCGAGATCTTCGATATCTACGATCGGCTCAGGAGACTGCGTAACAGAGCTGCGCATGACCCCGACACCGTCACATCAGAAGCTGCGGTCGACTTCATTTCGAGCTGTCGGACTATTGCCCGGGTCATCAAAGAAGACCCCGGGTTGTTTTAGGCATGCCGG # Right flank : GCTCGGTTCGGTCACGCGATCACCATCGGGTTGGCGTCGTCGTCCAGCGGGCGCGCGGCGAGTTCGGGCAGCCGGTCCCTCCACGGCGCTGCCACGGCCGTCCCGGTTCGGGCGAGGGCCTGCTCGCGTAGCTGCTTCAGCCGTACCGCCAGCAGGTGCTGCGCGGTGCGCTCTCGGGCAGCGTCACCGGCTTTCGTCGCGGCGGCGACGGCGTCCGCGCCGTCCGGGTTGTGCTGGAACCAGCGCCGTCCCCGCTCGGTCCGGTACGCCTGGGCCGCCTCTGTGTCGGCTTCCTTGGTACGCCCGAGCCGTCCCAGGGCACTGCTGCGGTACTCCGGCAGCGCCGCTTCCACGGTCTGGAGCGCGGTGAAGGCGAGTACGGCGTCGACGCCGGCAGGGTCCGCGTCCAGCTCGCCGGGCTCCATCATCGCCATGACCTCGTCCTGCGCCCTCGTGATATCGGTCAGCAGCGAGGTGCGGACCTCGTCAGTGACGGCGCC # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCAGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCAGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 36794-36100 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000029.1 Streptomyces anulatus strain JCM 4721 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36793 29 100.0 32 ............................. GGCTCACCCAGCACGTACGGCTGCTGGAAGGC 36732 29 100.0 32 ............................. GCCGCCGTACGGGCACGGGCACGGGCCCCCGG 36671 29 100.0 32 ............................. TCCAGCTTCAGATGCCGGGCCTTCACCGGCCT 36610 29 100.0 26 ............................. CTTGAGGACGATGGCGAAGTAGAGGG 36555 29 100.0 32 ............................. GGCAGCTCCGCGACCGGATCCGGGAACCCGAG 36494 29 96.6 32 ..............T.............. CTGTACGGATCGTCCGACACCTTGCCGAAGTA 36433 29 96.6 32 .G........................... GCCGAGCAGCTCGGCCCCGTGCTCCACACCGC 36372 29 96.6 32 .........................C... GAGCGGTACAACGCCTGCCGGCCGACGCTCTA 36311 29 93.1 32 .........C....T.............. TACGGGGGTCGCGGCCCGTACGTGTACGCCGA 36250 29 86.2 32 .....G..T..A.............C... CAGTCCGGGCCCCGGCCACACAGCTGCGCGAG 36189 29 89.7 32 ........G..A..........C...... CCGTAGGTCGCCAAGCCCCTGCGGAACCTGCT 36128 29 69.0 0 .....A...A.T.G.......G...AAAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GGGTGCTGGCCCTGCTCGACTGGTACGGCTCCGGCAGCGGGCGGTGCTCCGGCTACCCCGTTCACGAGGGCGTACCTGGCGAGCTTCTTCGCAGGGTTCCGATCGCCGAGCTGCTCGCAGGGCTGGCCGACTCACGGGCTGGAGAGCGGCACGACGCCGGGGCTGTGCGGCATCTCGTGGGCTGGAGGACCCGCCCGCATCAGAAGCGCGATGTTGCCGGCCTGCCCGAACCATTGCGCGCCAGGCTGCTGGCGCACGCCCGCCGTTCCGGAGACTCCGACAAGCAGAGCCGCGCAGAACGGTGGTTGGCACCCTCGCGGGCCTGAGAGCCCTGCCCGAACGCGGATGAGACCGAGCAGCGGGCGGCATCGCGTCGTTGAGACCGGTGCCAGAGATAGCCTTGTCGTCACGGCAGTTGAGAACTGAGGGCCGATTTGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCGTTCCCACTGTAACGCTGCAGGTCAGAAAGT # Right flank : GCCGCCTTCGTCCTCGAAGAGGAGCCAGGCTCCACGTGCGGGGCGTCAGGGTCTCCGCCCGCGTCCCGTGCGGTGCAGTAGACGGGCAGCCCGACGGCGGTCGCCTGGTCGTCGTCGGCATCCGGCAGCGGCCCGCCGTGGCGTTCCCCGTAGTCCCGGGCCAGTCCCGCCATCAGCTCGCCGACACCACGCTCCGGCCCTGCTCGCCGGGGTCGGTCTTCGGCGGCAGCAGCCTGAGAGAGTCGAGCGCCCCGGCGGTGGCCATCATCGTGCGACGGCTGGCCGGCGTCGGTTCGGGCTGCTCCTTTTGCGCGCAGGTGTGGTCCTTACTGCCCCACTCCCAGTAGAGCGTGGGGGTGGTCATCCTGCCGAGTTCACGTTCGCCCACGTCGTGGAGGCGGTGCGCCATCTCGGTGGCACCGGGAGTCAAGGTGCCCTCTACGTACGGCTGTTGCGGTGGCGACTTCGGCGGCGCGGTTGAAGCTGAAAGCCCCATCTCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38950-38006 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000029.1 Streptomyces anulatus strain JCM 4721 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38949 29 100.0 32 ............................. CTCTTCGAGTGGCTGCACAAGGCGGTCGTCTC 38888 29 100.0 32 ............................. GCCCCGCCGGATTACCGGCGGGGCGTTCTTCG 38827 29 96.6 32 ........T.................... GACCCGCTACCCACCCGAACGCCTGAAAGGCC 38766 29 100.0 32 ............................. ACCGACACGTGGTTTCCGGAGGGGCGTACCAG 38705 29 100.0 32 ............................. AACGGGCATACTCCCGCCCCGGCAAGCGAGAC 38644 29 100.0 32 ............................. TGGCCACGCTCATGGACGCGATCCAGGGGACG 38583 29 100.0 32 ............................. GTCCTTCAGCGCATGTCGGTGGCGCTCATGCA 38522 29 100.0 32 ............................. GGGCAGGCGCTCGGCCCGACCGTCCTGATCCT 38461 29 100.0 32 ............................. GTCGCGGTGGACGCAGCCTTGACCTTCGCTTC 38400 29 100.0 32 ............................. CATGGCCGATGCCAGAGTCGCCCAGATCGTCG 38339 29 96.6 32 .....T....................... GTCCGCACCGGCCGGGCCGCGATCCGCGCCGA 38278 29 96.6 32 .............T............... TCGGCTTCCTCGGTGTCCGAGGGGAGCAACAC 38217 29 100.0 32 ............................. ACCACGTACGGGATGAGATCGCCATCCGAATG 38156 29 100.0 32 ............................. ATCCCCACCAACGCTCACAACTGCCGGGCCCG 38095 29 100.0 32 ............................. CAGCGCAGTTCTTCGGGAGCGAAGGCAGGCGG 38034 29 93.1 0 .............GT.............. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCCGCGAGGTGTAGGGACACTCGCCGGCCGCCATCGGCGACCGCGGCCCGCATCAACGCCTCCGTCAGGTCGCCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGCTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTCCTTCCAGGCTCGTTTCAGGACGCGGCGGCTGTACAGGTCGCTTCGGCGGTGGTGGAGTCTTCGGCGGGTAGTCCGGTGTGTGATCCAGCACGAGTGCTCCCAGGATCGGCGCGGGTACCCATCGTAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGATAGTCTTGTCGACACGGCAGGAGAAATCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GTCATGCCTAACCCCTTTCTGGTCCTTCCAGAATGGCGCCACCCTGTTTACCTAGGGTGTTGCCTGAACTGTGCGTGCGGGCACGGGGTTGCGATGCGGTCGGACGCTGCGGTGGAATCGGGCGGGCTGTGCACCTGAGGCCCCGGCGGGAGGGACTGGTTCATGGACGGTATGACAGCTCTGGACAGCGTGCTGCAGCAGGCGCACATGGTCCGGATAAGTCCGGTGAGCGGGTTCGGCGGGGACGGGGAGATCTGGGTGGACCTCGCCGATCCGGCCGAGATGGGTCAGCTCAGGGCGGCCATGGGCGTGGAATCGCTGGTTGGGTCTCGCTGCATGTGTCTCGGGGACGTCCGCTTCGAGGTGCTCGACCCCGGCGGTGAGCGACTTGCAGACGTTGTCCTGCACCACGGGGCGACGCTGAGGTGGGGGCAGTGGGAGAGCGACGCCGTCCTTGTTGACGGCCTCCTGCTTCTGGCCTGGTTGGACGGCCATGGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 40634-39721 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000029.1 Streptomyces anulatus strain JCM 4721 sequence29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 40633 30 100.0 31 .............................. ACCAGGTCAAGGTCACCGGCAGCATCGAGAT 40572 30 93.3 31 ......................G......T GCTGCACCGGGGTGGTCACGGTGTAGGACCT G [40547] 40510 30 100.0 31 .............................. GGCCCGGCTGGTGGTACGAGCCGAAATTCGA 40449 30 90.0 31 .............CC..............T GGCCGCCGAGCGGTGCGTCGATCGTGTCGGT 40388 30 86.7 31 .........A...CC..............C GCCACGCAGCGTAAGCCCGACACCCGTTCGG 40327 30 90.0 31 .............C..........A....T CGCCGTCCTCGTACGCGGACCGGCGCTTCGG 40266 30 93.3 31 .............C...............C GGCAGACCGTGCTGGTCCCGGTGTTCGTCAT 40205 30 86.7 31 .............CC....AA......... TTCCCGGGCTTCATGCCGGCGGTGACGGTGC 40144 30 83.3 31 ..........TA.C...A...........C GGTGTCGCGCCGGGGCGACACAGGAGGCGAA 40083 28 76.7 31 ...G....TA.C.--..............C TCGTCCGGTTCGACGTCACGGACGTGGACGG 40024 30 86.7 31 .............CC..........C...T GCTCAAGGACGCGGCCCGTATCCGGAAGGTC 39963 30 90.0 31 .......T.............G.......A TGGGTCGGCAGATCAACTTGTCTGGCTCCTC 39902 30 86.7 30 ........T....CC......G........ CAGTGTCGGCGCTGATCACCATCCTGCGGC 39842 30 86.7 31 G..........A.C..T............. AGGGATTCTCGGCGGCCGACCCGGAGCCGAA 39781 30 86.7 2 ..T...........C.T............T CT Deletion [39750] 39749 29 83.3 0 ........-.TA.C...............A | ========== ====== ====== ====== ============================== =============================== ================== 16 30 88.8 29 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : TCTGCTGTCAGCCCTGGTCACGGTCGGCGACCGGCAGATGCACCCGCGATTCCCCACCATCGCTGAGCAGCTCGGCGCTACCGCCGGACGCTATCCGACGCAGCAGCGCTCCACCTGGAGCTACGAAGTCCTGAAGTCCCATCAGCGCTGGCGCCACCGGCGCTGATGCTGGAAGTCCGCTCCCCACGCACGTGAGGATGACCCCATCGCCATGGGCGCGGTCGCGCTCGCCCTCACCTGCTCCCCACCAGGTGGGGATGGCCCTGGGCGGGTACGGGCGGGCTGGTGCACTCCGCACTTCTCCCCCCATATACGTGGGGATGGCCCCTCCGTGACCGCCGGCCAAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGAATAGCCTTGCCGTCACGGCAGGAGAAAGCTGATGGTCGATATGTCAGATTCGGTGAAAGTGCTCGAGAATCGCACCCACTCCTTGTAAAGCTGCAGGTCAGGAAGA # Right flank : CCCGACCCAGTCCGAGTACGAACCTGCCCTGCTCCGTGGCCGAGTCGCTGCAGGCCCGCTCACGGACTTCTCTCCGCACCATGGAGTGGGAGCCCGGTGGATTCCCGCGTTCTACAGGTCGAGTACCGCCCACATCCTGCGGCCGTCTTCTGCGGTGTCGGTTCCGCACGAGACCGCGCCCAGGCTGGTCAGTTCCGCAAGGACGGCTGTGTCCGCGACCGCGAGACCTGGCCGGTGGGACAGGGCGACGATCAGCGCCTGCCGGTTCTGGTCCGCGAGGTGTAGGGACACTCGCCGGCCGCCATCGGCGACCGCGGCCCGCATCAACGCCTCCGTCAGGTCGCCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGCTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTCCTTCCAGGC # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1636-1241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000033.1 Streptomyces anulatus strain JCM 4721 sequence33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1635 29 100.0 32 ............................. CTCGGGCTTCTTGGATCCGACCTTCCGGAGCA 1574 29 100.0 32 ............................. GACTTGTGCCAGTACCCGACGTAAAGGCGGTC 1513 29 100.0 32 ............................. CACCCGTTCGGAGGGCGAGGCGGAGCCCGGGA 1452 29 100.0 32 ............................. TCGCTCCGCTCCGGCGGCCCGGTTTTTGGAAC 1391 29 100.0 32 ............................. ATGGCGGCGCGGATGCTGGCTCAGCGCGAGGC 1330 29 100.0 32 ............................. GACGGCTACATCGACGGGTCGAAGCCGAAGAA 1269 29 93.1 0 ...........A..T.............. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AACTCCGGTAGCAGCTCTGAAGGGCCATAGTTCGAGCACGCCGGATCACAGTCAGGATGCTGGGCGGCGACCAGGGCCGCCGCGCCCACGGCTCGCTCGCCGTCGTAGATACCCAGGAAGTCCGCAGGCCCGGCGGCACGCTTGAGCACGCCCCGGATCATGCCTTCGCGCTCTTCCGGTGCTGCCTCGTCCAGTTCAGCGGCGAAGTCGGCCGCGGTGTCGTTGTCGAAGGGGCCGATGTCCCAGGTGCCCATGTCTCTCCTCGCGCGGTCGTCTGGGGATCGTCGCACTGGCCACTGACAGTGCGCTCAGGAGGCTCCCAGGACAGGCGCGGGTACCCATCGCAGAGGCGCGATTACCTGGCGGGACCAGAACAGTTCGCCGGGTGCTGGGGATAGCCTTGTCGTCACGACAGGAGAGAGCTGATGGTTGATATGTCGGGTTCGGTGAAAGTGCTCGAGAATCACGGTTTCCCGCTGTAACACAGCAGGTCAGTAAGA # Right flank : CCGCGCCGTGCGGTGGGTCCTCGACGCGAAGGCCACGCTCCTCGACCTCGAAACCACGGCGGACGTCCCCACCGCCCCCTACCCCGGGGCTCGTCACCCTCGGAGCGACGGAGAACGGGGGCCTGCTGCTCGCCGACCTCCTGCACACCGGGGCGCTGCTCCTCGACGGCGCCGCCGATGACGTCCTGGCTGTCGGGAGGGCGATGGCCCTGGAGGCCGGAACGTGCGGGTGGACCGACCACACCGAGATCATGACCGTCGGACTCGGGACCCGCCTCGCGACGCTGCTGCCCCGCTGCCGGGTCCGGCCGCTGCCCATGTGTCCGCCGTCGTCGCCGACCTCGGAGCGCTCCTCCTCGAGGTCCACCAGCAGACCGGCGGGCCGGACATGCCCGAACCGCTGCCGTGGATCCTGGTCTGCGCCGGAGATGTCGACGCCGAGCAGGCCTGGCAGCTCGCCGACGCCGTCTCGGCCGCCCGGGACCTGCCCATCGCGATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5869-5169 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000033.1 Streptomyces anulatus strain JCM 4721 sequence33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5868 29 100.0 32 ............................. TCCCGCAGGATCCGGACGTGGCGCTTGACCGT 5807 29 100.0 32 ............................. AGCCGGGCCGACGCCTGCGGGTCCCGCAGGGT 5746 29 100.0 32 ............................. GAGGCGTCCAGCAGCGGGGCGCTCATCCGGTC 5685 29 96.6 32 ............................T GATCATCGTGGGCATCCAGATGATGGTCTCCG 5624 29 100.0 32 ............................. TGGCGGCACTCATCGAACCGCTCGCCGTCGCC 5563 29 100.0 32 ............................. AACGCCAACAGGGGGGTAGGGAGGGGTGGGGG 5502 29 100.0 32 ............................. AGGTCCAGCGCCGCGCCGAGCGCGAGTTCTTC 5441 29 100.0 32 ............................. GTCGACCCGGACGTCAACCGGTTCGGGCGGGC 5380 29 100.0 32 ............................. ACGGGGTGCCTGAGGCGCCCGTCGTTCAGCTG 5319 29 100.0 32 ............................. AGCGCCGGCAGGAGCTGGACCAGATGCACGCC 5258 29 100.0 32 ............................. CCCACATCGGCGATCCTGCTCGGTCTCGGTGT 5197 29 86.2 0 .......A.......A........A...A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GTCGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACCACCAGCCGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATTCCGAACCTGCTCAGGCAGCCACTCGTCCCACAACAGCCCTGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGCATCCCGGTCGTGCTTCGCCCACACCCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACCGAACAACACGCCCTGATCGGAAAATCTTCTGCTTTTCCACCGACCACAGCACGTCAACCGACAGCCCGCCGTACGATGCGCCGACGTCATCCGCGACCCAACACAACAGGCAAAAGAAGAATGGCGAAATGGTCAATATGTCGGAATCAGTGAAAGTGTGTGAGATCTCGATCCTCCCGCTGTAACGCAGCAGGTCAGAAAGA # Right flank : CGGCGGGGTCCGGAGCCGGAGAGCGCGGCCGTCTGCTCGCTTACGGGTCTCAAGTAGTAGTAATTCTCGCTGATTGCGCACTGAAGGTGAGCGGAAGTGAGCAGGATGCGCCTAATGGTGGGCAAGGTGGGCTTCTGTAACACGGATGGCATAGACGATCAGTTACATCTCTGACTACTCAATGGTCCCTGCATAGCCAGGGATGATCCCACGGAGGGCATCGCAAGTGCTTGCTCCCTGCGCACGCAGGGGTTTTCCGAAGTTCAGCCGTTCCTCGACAGCCCGACATCATCAGCAAGCATGCGTGGATGCGCCACAGGCAGGCATGATGCTGAGTAGCTCAGTCGCTGAGATGGACGGAAGCAGGCTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGTGTCCAAATCATCGAGGGGATCATCGAGCCTGTGTCACCGACCTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 15501-16739 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000033.1 Streptomyces anulatus strain JCM 4721 sequence33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15501 29 100.0 32 ............................. CCTGGTGATCGGATGCCGACTCTCCGAGAGGT 15562 29 100.0 32 ............................. GACCACGAGTCCGCCGAGATACACCGCGCCCA 15623 29 100.0 32 ............................. AGCGCCTGAAGGTCGGCCTCGATGGCCGCCTC 15684 29 100.0 32 ............................. ACGGTCGTACGCCACTACAAGGTCCACACCCG 15745 29 100.0 32 ............................. GCCTCCGTCAACATCCGCACCAACGACAGGAG 15806 29 100.0 32 ............................. GTCCGCCCGATCAGCCGCGCGACGTCCGGCTC 15867 29 100.0 32 ............................. TGCGGCTGGTGCATGTCGACGCCGAGTGGAGG 15928 29 100.0 32 ............................. CAGCAGGTGGTGCGCCCGGATCTCGTCCGCGC 15989 29 100.0 32 ............................. TTGGCGGCGGTGTCGCGGGCGGCGTTCTCCAG 16050 29 100.0 32 ............................. GGCGCGTAGTACGGCTGGAGCGTCTCCCACCC 16111 29 100.0 32 ............................. AGTTCGTCCAGCGGGGCCAGGAGCTGTTCCGC 16172 29 100.0 32 ............................. AGACGGCCCTGTACCGGTGGGCCGGACGGCCC 16233 29 96.6 32 ..............T.............. GGGTCCGGCATCGCGACGTCGTCGAACTCGCA 16294 29 100.0 32 ............................. GACGCGCAGCGTCAGGGCCTGGGCGGGATGAT 16355 29 96.6 32 .........C................... TAGCGCTTCCAGTTCCGCAGTTCCGGAACTGG 16416 29 100.0 32 ............................. GATATGCCCTAGGGGAAAGCACTGCTGTGCCC 16477 29 100.0 23 ............................. CTCCCGGGCATGAACCACGGCGT Deletion [16529] 16529 29 100.0 32 ............................. GAGTCCGCGTCCCCCGTCCTCGTCCAACAGCT 16590 29 100.0 32 ............................. CGGTCTCGGCCGATACGGAGCCAGGCGGATCC 16651 29 100.0 32 ............................. GAAGTGGAGACGACGTTCTGACGCAGCCCCTC 16712 28 86.2 0 .................-....C.C..G. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGGCTGAATGTGGCATCCGGGGTGAACTACGGAACGGACGAGCAAGAGGCAGCAATCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCAGGCCTGCGGGGCTTCCTCACCCGATGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGCAATCCTTCATCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCAATACGCCGGACAAGGACGTGCGCTTCTCGCCCACACAACCAACAACGAGCAGGGCTTCACGTTCCGTACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACTCTGATCCAACGTCCCAACGACAGCAAGGGTTCAACGAGTAGCCCTAAGAAGCCAGGGTGGAGCGCAGCATCCAAGCGCCGCCGTTCCGGAAAGAGGTAGGCGAAATGTCTCAGATGTCGGAACTGGTGAAAGTGCTCGAGAAACTGATGAACCCACGGTAAACCTGCAGGTCATCGAGT # Right flank : CGCAGAGAGCACCTGTCGGGGGCGCCGATCCGTACCCCATCCATGGACGCAGTCAACGTGACGGAGCTCGGCCAGCGTGTGCGCGTGGCGGGCCAGGCCGCGTACGGACGTCAGCCGTCCGCGGTGGTCGTGTCGGCGGCATGAACTGGGCGTTATCCGCATCTCGGCGGCAGTTCCAGCTCACCGCCGCTCGCGCGGAGAGCACGCCTGCGCCTGGTCGAGGGCCAGGGCTCGAACGGCTCACCTCCGCTCGAGCGGAACATCCCCAGGTCGAGGGACCGAGGTAGCCGTGCTCCTCGCGAGAGCGGAGGTGAGCCGCCCGTCGCCACCGGCTATGGGGCGGTCTTGTACTCGACGACGGAGTCCGCGCACGGCTCGGCGAGGTTGAGGAGTGCGGTCTTCTCGGCGTCGTCCATGGTCAGGGCCCAGCGGAGTTTGGTGGCGGTCCAGTCGACGAGGTACGTGCACGTTGCGGACTCGGCGGGCGGCATCCACTGGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82402-82006 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000025.1 Streptomyces anulatus strain JCM 4721 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82401 29 96.6 32 ............T................ GCCTGGAACCCGTACTCGGCGGCCAGGATGCC 82340 29 96.6 32 ..........................T.. GCGGTGATGGTGCCCGCGACGAACTCGGTGGC 82279 29 93.1 32 .A..C........................ TCGGAGACGCCGGAGGTGTCGTCCGGGTAGCG A [82267] 82217 29 100.0 32 ............................. AGGAAAGCCGAGTTACTCGGTGCGGCACTCAT 82156 29 100.0 32 ............................. GAGCACGACTGGCTACTCCGTCCGGAGCGCAC 82095 29 96.6 32 .........................A... GCCTTCACGCGGGCGCCGGTCCACCGGCCGCC 82034 29 89.7 0 .........................C.GT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAACTTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACCGCCAAGTCCCCTGCCAAGGTGGTGACCTCGGCTACAGGTCACCGACGAAGTCGCCCCCTCCGCCGCTCCCCCCACGAGTTCCC # Right flank : CCACCGAGGGGTGATTTGGGTGCCCCGGCGGGTTGTCGACTGCATTGCGTTACCAGTGGTGCCACCCAGCCGATGCAGTTCTGACCTGGGGCGGTCACAGTCGCTTTACGATGGGTGTTCGCCGAAGCTGGGAGCCCATCGTGTCGGAACACACTCCGGACTACCCGCCGAAGACTCCACCCCCACCGAAGCGGCCGATTTCGCCGCCGCGCCCGGAAACGGGCCTCGAGGGGACGGGACGGGCGCGGATGCTGGTGCGGAACCGGCGTTCGGCGAACTGGTCGTTGGAGGCCGCCCCGTGGGCTGCGCGGAAGGCGTCAGGGTGCGTGTTGGGGCAGTTGCACGATTGGGGTTACCGAGAGGCTGATGAGGCCGCGGCTGGACTGACGGAGCTGCTGGTGCGTACTGCGGTCGCGGATGGCGGCCGGCGTGTGTCCGTGCACCTCGCGGACCAGGACCGGCAGGCGTTGATCGTTGCCCTGTCCCACCTGCCGGGCAAC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84635-83205 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000025.1 Streptomyces anulatus strain JCM 4721 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 84634 29 72.4 33 .A....C.T..A...A...GC.......C GTCGTCGGCACGGTCAGCAAAGAATTCCACGGG 84572 29 82.8 32 AC...A.....AG................ CCGAGGAGCGCGGCTCCGACGCCGTCGCTGGC 84511 29 96.6 32 ..........T.................. CAGCTGGCCGCCGCCGCGCGGGTGTCTGATCC 84450 29 82.8 32 ....C...T...G.C....G......... CAGGCCGGTTGGCCGGAGTACATGTCGGCCGT 84389 29 89.7 32 .............A..........GC... GGCACTCCCTACGCGATCGTCCCGACGACGCT 84328 29 82.8 27 .G......T.G..C.T............. CCCGCCGTGGCTCTACACGGTAATCCC 84272 29 93.1 32 ..A......................T... ACCCGAGAGGTCGAGGCGGCGGCGGCCGCGGC 84211 29 96.6 32 .....T....................... GTGATGGGCGGAGCGTTCCGCGTCGACCGCGT 84150 29 100.0 32 ............................. CTCGGCTACCCCGACCTCGCGACGATCGCCCT 84089 27 86.2 32 .....T..........--.....T..... TTCATCGAGTTCACGAAGGAGGGCCTGGCCCT 84030 29 82.8 34 .C.......AT...C...........T.. ACCGGCGGCACCGGGCAGACCACCTCGGCACCCC 83967 29 93.1 32 ......................C..A... GCGCAGGGCTGCCGTGCCCGCGGTCCTTGATG 83906 29 89.7 34 .....TGT..................... GGGGCGGGCCCGGGTGGGCCGGTATGGGTGTCGT 83843 29 79.3 32 .C.........AGA.........A..T.. CAGTACCAGAAGGGCCTGTGGTCCCATGAACT 83782 29 89.7 32 ........T....AG.............. GAGGCCGGGGCCAGCGAGCACACATCGGGCCG 83721 29 96.6 32 .C........................... AGGGCATCCGGCGGGCACTCGACTCCTAACCC 83660 29 100.0 32 ............................. CGGGGACGGACCTGGGCGCCCAGGTAGTCCCA 83599 29 100.0 32 ............................. TACCGGGAGGGCATCCTCGGCGGCATCCTCAC 83538 29 100.0 32 ............................. CAACGCGTGGCACCGGACGGCAACGTCACCGG 83477 29 100.0 32 ............................. TCGAAGGTCAGCGCACACCGGCACTGGATGCT 83416 29 100.0 32 ............................. TTGTACATGGTGGTGAGGACGTGAGTCCCGGA 83355 29 93.1 32 ..................A......A... GCTCCGTAGGCGGGCCAGCCGAGCCGGGCGGC 83294 29 89.7 32 .....T.T.................A... AACGGGACCGCGAAGTACAAGATCCCGGCGTT 83233 29 93.1 0 .C.......................A... | ========== ====== ====== ====== ============================= ================================== ================== 24 29 91.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : AGCCGTTGCACATCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCACGGTTCCAAGGGCCCTGTTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACGGCCCGAGTCCTCGACGCCGAACTGCTTCGCGAAAAGATCGCTACAGGCATCGGGCGCGGAAAAGCATATGGATGCGGACTTCTCAGCATTGCTCCCGCTCGATAAATTCAACCAGGTGCCGACCGAATCCGTGCCGGGCTCCTGGTCGCAGTGCTCCTACACGGCAGCGACCTCCACATTTCCTCCATGGCCACCCTTGCGTGGGAATGGGAATAAGCCACCCACCAGAGTAAGTGTTTATACGGAAGGTGGCGTTGTCGTCCGCGTGGGAAAGTTAAGTGACCCGCTTGGTGTGAGTTATCTGCGCGACTACCTCCGGTCAAATTCCGCTACGCGCGGAAAGCGGCGGAATGACGCCGAGCTTTGTAAGGCGAGGTAGCGAAGAGA # Right flank : GTCCGCGACCTCAGCGACGGGGCTTCTGGGCGGTGGCGCCGACGGCTTCCTCGACCACCTCGGCGGCTTCGCGAAGGGTCGCAGCGTGGTCCACAAGTTCGGGGCGGGGCGGCGGCGAGGACGCGCAACTGGGCGGCAACTTCGTGGCCGAAGAACTGCCGCACGTACCTTCCCTCGAAGTACGCCATCACAGCATCCAGCGTGGTTCGGGCATCTTCAGTTCTCCTCGGGTTGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGGGCGTTGGTTCGGCAGGTGGCACACGCCATCGATCTCGCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAACTTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGGC # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 93844-96656 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVK01000025.1 Streptomyces anulatus strain JCM 4721 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93844 29 72.4 13 A.....CG..T......A...ACC..... GCCAGGCGCAGAA T [93870] Deletion [93886] 93887 29 89.7 33 .C.....T.........A........... CTGGTCCCACACCACACCGGCAAGGCCCACGTG 93949 29 96.6 32 ..C.......................... CCCATCGGACCGATGACCGTCATCCCGGTCTC 94010 29 93.1 32 ..C...........G.............. GTTGCACAGCTCGTAGGGAGTCAGCAGCGCTT 94071 29 93.1 32 ...............T.........T... TGGTGCCGCTCCCTCCCGCCGGAGGCGATCAC 94132 29 100.0 32 ............................. ATGGAAAGCAAGGGGACCGCCGAGGTCGGCCT 94193 29 100.0 32 ............................. TCTTCCCGGTTCTTCACTGGGCTCATATTTAG 94254 29 96.6 32 ..C.......................... GCCGAGGTGACGGTGGAGGTCGAGGACAAGGA 94315 29 96.6 32 ..C.......................... GCGACCGCACCGCCCGCGGGAGGGTGACTACC 94376 29 96.6 32 ...........C................. TACCAGACCTGCGGGTCCTTCACGGCCGCCAT 94437 29 93.1 32 ..A......A................... GTCGAGCGCAACGTGATCGGCATCGACTCCCT 94498 29 100.0 32 ............................. CCGCCCTCTGGGGCGGGGACCTCCTCCTGACC 94559 29 96.6 32 ......C...................... TCGTGATCTCCGCCGGCCTTCGGTACACCGCC 94620 29 100.0 32 ............................. GAGTTCGGAACTCTGCGCACCGCGGTCAACAG 94681 29 96.6 32 ...........................T. GAGCTTGAGGACTACATGATCGAGGGCGGCGC 94742 29 96.6 32 ....................A........ ACGCTGGAGGATCTGAGCGCCGCCCGGCCCTT 94803 29 82.8 32 ..........T.T.........GC....A GCCCGCAGGCCCTCGTCCGTGAACAGGGCGTT 94864 29 96.6 32 .C........................... TTCGAGGCGGAGAAGGCTGAGCTGGAAGGGCA 94925 29 100.0 32 ............................. GTCGACCAGAACGGCATCGGCCACGGCGTGGT 94986 29 100.0 32 ............................. AACTCCACCACGGCGTCGATCCCAGCCGAGAC 95047 29 100.0 32 ............................. ATCCTCGTCTCGGACCTCCTGGACGCCCACGC 95108 29 96.6 33 .............A............... AGATTGAGCGGCAGACGCGGGAGGACGGACGCG 95170 29 96.6 29 ............A................ GCAGCGGGGGGAGACTCGTCCCTCAAAAC 95228 29 93.1 32 .........T............A...... CTGACGGAACAGGCCGTCATCATCCGACGGGA 95289 29 96.6 32 ........................G.... CACCACGGGCTCAAGATGACCGGCGTCCTCTT 95350 29 96.6 32 ........................G.... AAGGCGTACATCGCCACGAACGGCCGCCCGCC 95411 29 100.0 32 ............................. TCGTAGTCCGCAACGTTGCCCGGCGTCGCGAC 95472 29 93.1 31 ..C..................A....... CAGCTCGACTGCCAGCCAGAGAACGGCCAGC 95532 29 96.6 32 ........T.................... CCCCGGTCCCCGCGATCCGGGAACTCGCCCCG 95593 29 96.6 32 .....T....................... ACATGGACGTCGCGGCCAGGGGTGTACCCCGG 95654 29 89.7 32 ...................G....G...C GGGGGCCGCCGGGCGGTACTGCGCCGACACGC 95715 29 96.6 32 ........................G.... ACGTCGAGGCCGGCCGTACGAGCCCGCTCCTC 95776 29 96.6 31 ..................C.......... GGGAAGGTTAAGGGGAGGCCGAAGAAGAACG 95836 29 89.7 32 ......GT....................C GTCAAGGAAACGACGGGTCGCGTCACCTCGCG 95897 29 96.6 32 ............................A TACCAGACCTGCGGGTCCTTCACGGCCGCCAT 95958 29 96.6 32 ..A.......................... ATCCGCCGGGGAGACCGGCTGTCGTCCAGAAC 96019 29 89.7 32 ...........A..............AA. TACACCCTCGTCAACCGGGACCTGCGCCGCAC 96080 29 89.7 32 ..C..T......................C CGGAGATCGAGCTTGCGGAGCGGCTTGCCGCG G [96082] 96142 29 96.6 32 .................C........... CCGTCGGGCGCCGGGCGGAAGGTCGAAGGAAC 96203 29 100.0 32 ............................. CCGATCTGCACCAGGGTCCAGGCGCGGGTGAC 96264 29 96.6 32 .........................A... CCCTACATCGGCGACGACCACGAGCCGGACGC 96325 29 93.1 31 ............T............A... TCACCATTCGGTCAGCCAGGTGTTCGACGGA 96385 29 100.0 32 ............................. GACACCGACAAGCTGACCGCGACCCGCCGGTT 96446 29 100.0 32 ............................. TCCGCGAGGTTGGCCACCACGTCGGCGGTCAC 96507 29 100.0 32 ............................. CACGCCCACAACGGCGAGGGCCGCATCCTGTG 96568 29 100.0 32 ............................. GCCCGGGGGTTGTGGTGGCCGATTTGGCAGAG 96629 28 79.3 0 .................-.TCC..TT... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 95.2 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GTCCGTTCCTTGAAACGTGAAGAGCGTGATTGTTGTCCCCGACGGCTACGGCACCACCCTCACCCGCCCCCTCGACGCACTCCTCGAGGCCATCCGCCCCGGCCTCACCATCCGCTACCGCTGCGCCGCCAGCCCCGTCCGCAAACCCGGTGCCACCACCCGCGCCCTCTACAACCTCCCGCCCGTTGTCGCCCTCACCGGCACCGCAGCCGACGAATGGTGGCTCCGGCAGGCCGACAACAGCGGCATCAAACCCCTCACCCACCACTCCCACCCCCTGGACACCTTCCGCGGGCAACGCCGCCCCACAGGCACCCCGCCCCAGCGCATCCGCCACTCCCGTACCCAGTTCGACGGAACCGCGGCCATCATCGACACCGACCTCCTGCGGACAGCAGTCCTGAACGGCGTCGGCCGAGGCAAGGCGTACGGCTGCGGCCTCCTCAGCATCGCCCCCGCAAGGCAGACTTCATAAGACCCACCACCCGGCAAGCAGGTAC # Right flank : GGTGCGGTGACGGCTTCGGTGAGCAGGACTTCTGCCCGGGTGGTGCAGGAGTCGTCGTCCTCGTCGACCCAGTGCTTGAAGCTGTCGCGCTCGTACCCGGTCCGCTTCTCCTCGGCGACCGGGATCTTCCCGATGGCTTCGGCCAGGGGGAGGCCGGATCCGTCCTGGGCGCCGCCGGGCGCACCGGACGGGTTGGCGGTGGCGGGGGGCTTGGGGTTGTCTGCCTCGAGTGTCTCGGCGGAGCAGGCGGTCAGGGTGATGGTGGTGAGCAGGGTGGCGGGCAGGAAGCCGAGGCGGCGCGTCACGGGGGACTCCAGCGGGTTGGGGCTGATGCCGGCTCATGATTTCAGTTGGGCAATGTTGGTGAGGGTGTGTCACTCGTTCGGGAGGGCTTTCTCAGGCGTTCTGTGTTCCGTGAGGTAGGTCACCCTGAATCTTTGCTCTGTTTGCGCAAATTCATGGATGTGTGGGGCGGAGGGGAAGGTTTGCCGGTGGCAGGG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //