Array 1 1251854-1252186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031078.1 Paracoccus yeei strain CCUG 32053 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1251854 29 100.0 32 ............................. TCGGGCGGCTCTCTGACGCAGACGCTGCAACA 1251915 29 96.6 32 .........................C... CCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG 1251976 29 100.0 31 ............................. TGGGTGCCGCATGTGGAGCAGCGCGGTGACA 1252036 29 96.6 32 ................G............ GTATGGGATGGAGCAAACTGGGTGACAGCGGA 1252097 29 100.0 32 ............................. GCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC 1252158 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : ACCAGCCCGATCGCGCGCATGCCAGCGAGACCTGGCGCAAGGTGGCCGAGCAGCTGCGCCCCCGCTGGCCGAAACTGGCCGACCTCATGGATCGAGCCATGAGAACGCCACTGGTCCGAGTGACCATGGCGAGGAGCGAACACGATGTGCTCGCCTACATGTCCTTCCCCCGTCAGCACCGCACCAAGCTTCACAGCACCAACCCGATCGAGCGCTTGAGCAAGGAGGTGAAACGCCGCGCAGATGTCGTTGGCATCTTCCCAAATGAGGCATCCATCATGCGGCTGATCGGCGCCGTGCTCTTCGAGCAGAACGACGAATGGCAGACATCCAGCCGATACATGATGGTCGAGGCCTTCGCCCAGATCGACAAGGAGGAGGTCGACCCCATCCTCAGCATTACCACAAAGGCGGCCTGATCATGACCTCAGGCCATCACGGAATTTACACCATCTTGACGGACGTTACCCCGGTTATCGCTTCGGTCTGGCCGATTTCCC # Right flank : GGCCACCAAAAAGCGTCTCGCCGATCAGGACTATCCGGCCGCTCTAGATCGTAAGCTTGGGCCGATAGTGGTGCTCCATACGAATGGCCGCTAATGCAACGTTTCTGCAGTCACTATGCCGCAACGCGGCTGACAGCTTTGCGCGCAACTTGTCGCTCTCGACCTACATAGCGAACGGCAGCTTTCTCCAGTTTTTGCGGATGCGATGCCGCACGCTCACAGTCCGCTCGCCGCCCGATGCTGCTGGATTCGGTGTTGGGGCAGTTTTCGTGACTACCGCCCCTTTGGCTGCTGTGGCCCGGCTATGGCTGAGATAGATGCTTGATGAGCGCGGGCAGTTCAGTCTGCACTGTGGTCCAGACGACATGCAGGTCGATGTCGAAGTACCCATGGGCGATGCGGTTACGCATCCCGCGGATCCCGCGCCATGGGATCGCAGGCTTTGCATTCGCAAAGTCGGGGTGATCCGATAAGATCCGGCTCGCGGCCTCTCCAACGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2181604-2184133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031078.1 Paracoccus yeei strain CCUG 32053 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2181604 29 100.0 32 ............................. TGGCGCTTGTCCAGGTGCCCCTTGCGGGCATA 2181665 29 100.0 32 ............................. CATGCTGTCGGCACGGACTGGGTGGCGCAATG 2181726 29 100.0 32 ............................. GCCGACCATGCCGGAAACCGCCGGCGCCAGGA 2181787 29 100.0 32 ............................. TCTCGCCTCATCAACTCCAGCGGCGTGGTGTC 2181848 29 100.0 32 ............................. CGATGGAGGCCAGGATGGCTGACCAGAACAAT 2181909 29 100.0 32 ............................. TATCCCTATGAGGTAGCAGAAATTCTAATGGA 2181970 29 100.0 32 ............................. CATCCGAATTTCGAAACCCTGTGTCGCGTTGT 2182031 29 100.0 32 ............................. TCGCGGAACTGCTGGGACTGCCCGCGTACTTT 2182092 29 100.0 32 ............................. CTATTTCTTGGTATGGGACAGCATTTGTGATA 2182153 29 100.0 32 ............................. GATTGTTTCCCTGATAAGCTTGGCGACAGGCT 2182214 29 100.0 32 ............................. TATTTGCGCGAAAGCCGCGAGATGGCGACGGC 2182275 29 100.0 32 ............................. GGGGCGCAGGTGAAGCGTCATGCCGATTTTAT 2182336 29 100.0 32 ............................. ACAGGTTCCGGCTTGTCCATTTGTTCGCACAT 2182397 29 100.0 32 ............................. CAGCATCCCCAAGCGAGGTGAAACATGACCGC 2182458 29 100.0 32 ............................. GATGATCGGGCGCGTCGTGCGGGCCGTGCTGG 2182519 29 100.0 32 ............................. ATTACCGTGACGCCCCAAGCATGGTTTGACCT 2182580 29 100.0 32 ............................. CACGCGGCGGCGATTGCGGCCAGCGCCACACC 2182641 29 100.0 32 ............................. TCCCCGCTGGTGCCCTCGGCCGTGCTCTCGAT 2182702 29 100.0 32 ............................. AAGCAGCAGTCCGATGCGCTGGCCCTGCTGAT 2182763 29 100.0 32 ............................. CAATCTGGTGGGCCTGAAAGCGCGTTGGCCCA 2182824 29 100.0 32 ............................. GTGACGCCTCACGACAACATCACAGCGCATGG 2182885 29 100.0 32 ............................. CACCGGGTGGCCGGATCACCACTGAAAAGACT 2182946 29 100.0 32 ............................. GATACCGTCTGGGCTGGTGACGGCGACGATTT 2183007 29 100.0 32 ............................. CAAGGCGCGGCCACGGTCGGCAGCGCGACCGC 2183068 29 100.0 32 ............................. CAAGGCTCCGCCACGGTCGGCGATGCCACGGC 2183129 29 100.0 32 ............................. CGCAGAGGTGAAGCGCCAGCGCGAATGGCGCG 2183190 29 100.0 32 ............................. GGGCGGTGGTGCCGGGCCGACGATGGCTGGCA 2183251 29 100.0 32 ............................. GTGGGGTCATCACAGTCCACTACCTCGGCGAT 2183312 29 100.0 32 ............................. CTGAGCCCATAGCTCACGGAAGAACCGGCGGG 2183373 29 100.0 32 ............................. AAAGCCTGCAATCGCGGCTTGGTTCGGCTGAA 2183434 29 100.0 32 ............................. TACGAACGCCAGCTACGGGAAATCCAAGACGA 2183495 29 100.0 32 ............................. GCCCTGCGCGCCAAAATGGACGAGATGGAGCA 2183556 29 100.0 32 ............................. GCCCAGATCGACGCGCAAGCGGAGCAGGTCGG 2183617 29 100.0 32 ............................. CTTCTTCAACCGGACTTCTATCCCTCCAAACG 2183678 29 100.0 32 ............................. CTGCATTGCAGGGGTGCCATCCGGGGCGGGAA 2183739 29 100.0 32 ............................. ATGCTTGGCAAGGTGCTTGAGGATCCGCTGGC 2183800 29 96.6 32 ....................C........ CTCTGCCGGATGTAGCTGGGCGAGAACTCCAT 2183861 29 100.0 32 ............................. CAGCCAGCTATCCCGCCTCTCTCTCATGACTC 2183922 29 100.0 32 ............................. ACTTTATGAGGTGCTAGGGCCGAAGGTGCAGG 2183983 29 100.0 32 ............................. GGGCTCACGCCTGTGGCCTCGACCGGCGGTGA 2184044 29 100.0 32 ............................. CGCCCAGCGCCTGCGACAGCGTCTTGGCCCGA 2184105 29 93.1 0 .....G..................A.... | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GGCTCCCCCGCACCCGCGGGGATAGACCC # Left flank : GCCCGTCGCGTCAAGGACCACCCGACCGAAAACATCGAGCGCGTGACCCGCCGCCTGACTGGCGACACCCTTGCCCGCAGCCAGACGATCCCCGCCATGATCGACCGCATCAAGCGCCTGATCGAGGCGGCCTGACATGGCGGGCCAGATGACCACCGTCGTGACCCGCGATGTCGAGGATCGATATCGCGGCTTCCTGACCTCGGTCATGCTTGAGATCGCGCCGGGGGTCTATGTCTCGCCGCAAATGACACAGGGGGTCCGCGACCGGGTCTGGACCGTGCTTTCGGACTGGTGGGCGGCCCTCGGGCGCGGCTCCATCGTGATGACCTGGCGCGACACGAAAGCGGCGGGAAATCTGCGGATCCTGACACTTGGCATTCCTGCAAAGGAAATCGTGGACGCAGACGGGATTTTGCTCGTAAAACGAAAGTAGGGATCGTGTCCCACACGTGATATGCTGTTTGAAATCGTTGTAGATCAGCAATATGCTGCCAAGA # Right flank : CTAGCATGGCCGGCTCATGTCCAACCCTAACCAGTAAAAACCAGAAGGAGGCAGTCACCCCGCGGGCGTAAGGGGGTGGACTGAATTTGGGCATAACCGTTCAGCGCACCGTCGGCCCCGAAGATGACTGCCCCGACCTTGCGAGTCCCGCTTGGGGCAAGGCGGCTTGACGCATCCAGTTGCATCCAAACGCTTTCAGGATGGCGGGAATATTGGCGGGTATAATAAATTAATCACAAAAAAATTTTTTATATCAATGATGTATGGCGGACGGTGAGGGATTCGAACCCTCGAGACGGTTCCCCGCCTACACACTTTCCAGGCGTGCGCCTTCGACCACTCGGCCAACCGTCCGTGCGCGCCGGTCTATCGCGAAGGATCGGCCGGCGCAAGCGGTCAGAGCCGGGAAATCCGCTTCTGCAGCTCGGCCAGTTGCTTGCGGATTTCGTCCATGTCCTCCTCGCCCTTGCGGGCGCGGCGGGGGTTGGCGGCATCATCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //