Array 1 228742-225803 **** Predicted by CRISPRDetect 2.4 *** >NC_014616.1 Bifidobacterium bifidum S17, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 228741 36 100.0 30 .................................... GCATCCGCGTTGCGGCAGCTTAGCCCGTAT 228675 36 100.0 30 .................................... TGAAATATTCCCCGACAATATGCGGTACCT 228609 36 100.0 30 .................................... CATAATAAAATTCCCCTATCTGTTTCTTCA 228543 36 100.0 30 .................................... AGAAGTTTCCGACAATATCGGCAATAAAAC 228477 36 100.0 30 .................................... TGTCTTTTATGATACGGTCGAAATAGGCTG 228411 36 100.0 30 .................................... GGTAGCGAACATGACCACGAAGAACAGCAA 228345 36 100.0 30 .................................... TTCCAGATTGTAACACCTGCCGCGAATCTA 228279 36 100.0 30 .................................... CTGCGTCGCGGGGAAATCTGAAAACACGGT 228213 36 100.0 30 .................................... ACACCATAAAAGTACGCACACAGACAAAGA 228147 36 100.0 30 .................................... GCGGTAACGTGGTTGAGGACGATATTATCT 228081 36 100.0 30 .................................... TTGCTTTTCCCATTGCTGTTGTGTGTGTAT 228015 36 100.0 30 .................................... GTCACCACCCCGCGCCACTCATGATATCAC 227949 36 100.0 30 .................................... CGTACATTTTGACACCAGCATGTATATCGC 227883 36 100.0 30 .................................... TGGCGTAGGCCGGAATGTCGGTTACATTCA 227817 36 100.0 30 .................................... ACCGTGGATGAGCGCTGGCTGGAGATATGT 227751 36 100.0 31 .................................... TACGGCCCGACCGTTCCGAGCAATCTTCGGC 227684 36 100.0 31 .................................... CACGCTGATGGCGCAGTGGGTCGATGAGGCG 227617 36 100.0 30 .................................... CGCTATATTGTTAGTTATGAAGAAACAACA 227551 36 100.0 30 .................................... TCGAAACGTGTGTTGAGTATGTCGCATGCG 227485 36 100.0 30 .................................... CCCGTCTAACGTGATGGGTGCGACCCATAT 227419 36 100.0 30 .................................... CGTACTACCCGCATATCACTTCGGGCATAG 227353 36 100.0 30 .................................... CTCCATATTGTAACACCTGTCGTCAATCGA 227287 36 100.0 30 .................................... TTTCGGTCAACGCGACGTATACGCATACGG 227221 36 100.0 30 .................................... CGCGGACGCGCTGCTGCAACTCGCCCAGCA 227155 36 100.0 30 .................................... TTGTCGCATCCGTTTCATTGCGGTACATTT 227089 36 100.0 30 .................................... ACCATTATTTGCATGTCCAGCATATTATTA 227023 36 100.0 30 .................................... TCGCGCGATATCTGGATGCACCCATCGAGG 226957 36 100.0 30 .................................... TTGTACTGTTCTGTTCGCCCGAAGTCAAGT 226891 36 100.0 30 .................................... CATACCGGCTTGCAATAACGCACCCTTTGT 226825 36 100.0 30 .................................... TTCTTTCACTGGACAATTCTCCACGCATGA 226759 36 100.0 30 .................................... ATAGACTTAAAACCCAGATATTGCCGCGTA 226693 36 100.0 30 .................................... TCGCATCGTTGGATGTCGACGCGCTGTCCT 226627 36 100.0 30 .................................... TTTGGGAGCTTGGTTTCTGCTGTGATTTAG 226561 36 100.0 26 .................................... CACTGCTGCTCTGTGTGTGTGTTGTT 226499 36 100.0 30 .................................... TACCCAAACACAAATGGATGACGACTTAAC 226433 36 100.0 30 .................................... AAGAGTTTCGCCGCAACGGCGTTCTCTAAT 226367 36 100.0 30 .................................... TTGTGGTGATGTTATTGCAGCCGAAATACA 226301 36 100.0 30 .................................... CAACAATCTCAACGGCATGGCCAGCATTGT 226235 36 100.0 30 .................................... TTTGACGCACCGCTAACAATTTCGGACTGC 226169 36 100.0 30 .................................... TGACGTGACGTTTGGTAGCTGCTATGTGAC 226103 36 100.0 31 .................................... TACAGCAGCAGAAAAAGAAGAGCACGTATGT 226036 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 225970 36 100.0 30 .................................... AAACTCACGCCGCTTAACTTGGCCTGCTGG 225904 36 100.0 30 .................................... TCATGTCTAACTATATTCGTGGTTAGATAT 225838 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 99.9 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : GTGATGCGCAATAGTGTTAGGGGCACCTCTGTTGCTGTCTTCTGGATAGCTTCCGGGGTGTGCTTTTGATTCTGGTGACATATGGGAAACGATTGATGCACAATATTCGGACTGTTATAGTGACATCCTATGTGAAGAGCGCTGTCGTTGGCGGCCTCAGGCCGATGCCCAAGGAATAAGTGGAGCGCATACCGCAAATGACCAGCCATCAGGAAGTCCCTGATGGCTTTTTTCATGCTTCAAGGTGTGTAAGCCTGTTTGACAGTGTCTGTTGTGGCTTGATTTTTCCGTTCAGTGGAGGTTTTGGGAGGTAGTGCCCGAAAGGTTGCGCACTTTGGATCATGCCCGCCCATGGCGCGATGACCGGTTCGCTTCCTGCAGATTGTCACCGAGCCGGGACATGTCGAGGTAACGCCGGTTGGACCATTCGTTCGCGGTGACGTACCTGATGCGCGCACAGACGAGCATGAGCGCGCCGTTCCCGTCCGGGAAGCTTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //