Array 1 60849-60637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRE010000045.1 Streptomyces sp. TML10 45_length_61361_depth_0.95x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60848 29 100.0 32 ............................. TCAAGCAGCAGGATGGCAAGGACATCTGGCTA 60787 29 96.6 32 ...G......................... AGACCGCCGGGCGCCCGAGGCAGCCGCGAGGC 60726 29 96.6 32 .............G............... AAGCCCGTGCAGACGGTCCTGAACTGGACCGC 60665 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTACTCGGAGCAGCGTGTCGAACCAGCGTCCGAGCCAAGTCTTCGGTGCGCGCGAGGGGTTTGTCCGAGACGAGGGCGCCTGACCTACGGCGGACCGTTGATCGCCTGGATGGGCGCTGTCATCCGCTGACGCCGCGGACGAAGGCGGGCCGGGTATGACAACAGCCCGGTGGTGGTCCGGCAGCTGCGTGTGCCGGGAAGAGAGCGCGCGGGGCGCGTGTGCCGCCACAACGGCAACCACCCATCGGCGTCACGGTCATACTTGGCCACACCGAACGGGCCGGCCCCCAGGACAGGCAGAGCCCACCACCGCACACCAAAGCAAGCCAACAGAAGCTCCTGCAGAGAAACAGCACCCCACCCACGTGCGATGATCGACTCACCCCCGGTCCAGTGAGAAGCACTTACGAGACCGAGTGCCACCAATGTCCCATTGGCCGGAATCCGCGATAGTTGCTGAAAGCGCGTCATTACAGCAATGATCTTGCAGGTCAGAAAGT # Right flank : ACCTTCAAGCTGGCGCTCTTCGGCCCCTTCCATTGCTCAGTGTCGGCCCATCGACAGTATGTGGTTACTGAGGTTGTTGCCGTGATGTCGTCAAGGTGAGGCCGGTTTCGGCGAGACATCCGTCGATGAGGTTGCTGCGGTATTGGATCTGAAGGAGACCACGACGGAGGGTGCTGATGAGGTGGTCGGGGTCGGTGAAGGCGGTGTTGGCCTGGCTGCTGCGCCGCAGCAGGGACCATATGTCCTCGACGGGGTTGAGGTCGGGTGCGTAGGCCGGCAGGAAGTAGCAGGGGATCCAGTCGTGGGTGTCGATGAACTGTCGTAGGCGACGGTCCTTGTGGACGTTGAGGTTGTTCCATACGAGCACTGCGCGGTGACCTTTGGGTTTCCCGTGCGGATCGGTGTAGGGCACCAAGGTGGGTTCCACAACGGCGTCCCAAGTGCGCACCGCAGGAGACCGGGGAGGCTTGCCCGCTGCTGGTCGGGCTCTGGCTGCGCCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80-1725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRE010000060.1 Streptomyces sp. TML10 60_length_37270_depth_0.94x, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 80 29 86.2 29 .C...T..................AC... GGCGCCCTCGCCGTATAGACCACCACCAA 138 29 96.6 33 .........................C... CATACGGTGTCCGGCATCCGCGTCCACCAGTAC 200 29 96.6 49 .........................C... GAGCAGATCGAGCGGGCGCAGCGGGTCATCGCGTGCTCCCCGCGCGTGC 278 29 86.2 32 .G.......A...AG.............. ACGGAAACCGGTAAGGCCAGTGCCGGATCCCG 339 29 93.1 32 .............AG.............. GTCGGGCTCTTGCCGCGCACGGGCGGGGAGCC 400 29 96.6 32 .............C............... GCCAGGTACGCCGTGCCCCAGTGCCCGAGCAG 461 29 93.1 176 .............AG.............. GGCCGCCAGGTCTCGACGCCTGGCTCGGCCGCGCCCGTGGAGGCTGCCTTTGGGTCCTTATTGCATTGACGGGTGACGGAAGTCGGTCCCGGAGGCGCACTTTGGGTTATATGTCGGATTCAGTGAAAGTCATGAAAAAGAAGCCGATGGCGCGGTAAGAATGCAGGTCAGTTACT 666 29 100.0 32 ............................. GTGTCCCGCTGGACGTTGCGCCGCTCGTTCTG 727 29 100.0 31 ............................. GCAGGATGTCCCGGTCGGGGTCGAACCCCTC A [755] 788 29 100.0 32 ............................. ATCACCCGGACGCTCCGGCTGAAGGACGTCAA 849 29 100.0 32 ............................. GCTTTCAGGAACCAGGTAACCCAGCCGCTTTC 910 29 100.0 32 ............................. GAGCGGGCCAGGTCGGTGACCCCGGCGAACGG 971 29 100.0 32 ............................. CTTCCGGGCGGCCAGTGAGTCGCCACCCGGTT 1032 29 100.0 32 ............................. GCCGACGTGTTCCCCAGCGAGTTGGGCGTCAA 1093 29 100.0 32 ............................. GTCGACGAGGCCACCGGCAGCCGCTCCGCACC 1154 29 100.0 32 ............................. GCCAACGAGGCCATGAAGGCCGGCATCGACCG 1215 29 100.0 32 ............................. TTCACCAGCTCCAGCTCGGTGTCCCCCTGGAC 1276 29 100.0 32 ............................. GCCGCCTCGACCTGCGCCAGCGTCCACGGGAA 1337 29 100.0 32 ............................. CGGGTGGCGATGAGACCGCCAGCGATGTCCTC 1398 29 96.6 32 ........................A.... CACGTCGGCATCGTCACCGGCACCCCCAGCAG 1459 29 93.1 32 C.......................A.... GCGAACGGTCTGGGAAACGGCGTCTTCGTGGA 1520 29 93.1 87 C.......................A.... GGCGCTGGCAACGAGATCAGGGGCCACCGGGACTGCTCCCCGCGCGGATGATCCCGCTGCCCGGCGGGCCCACTGCCTTCTTCGCAC 1636 29 93.1 32 C.......................A.... AAGACCAGCGCCGTCGCAGCTCAGACCCCGGT 1697 29 93.1 0 C.......................A.... | ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 24 29 96.6 41 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : AAGTCGTGAACAAAGCCACCCCGCAGGTGGGGCTTCAGAAACTGTCCGCTGGCTACCGGCCGTCCGCCTGCGGGAGCTGG # Right flank : CTCTTCGAACCCTCCGGTCGACGTGACGCGGTACGTGCGGGGACGACCCTGCGGCTGGCCATTGGGATGGGACTCCCCCTGCTGGCGATGCAGGATCGGGGCTGCCGCCGCGCCCTCATCGCCGCTGATGAGGGACGGCAGTACGTTTCGAAAGAGGGCTTTTAGCCTGTATGTCGGATTCGGTGAAAGTCATGAAAGAGGGGCCACTGGCGCGGTATAAATCCAGGTCAGTGAGTGTGCTCCCCGCGCAGGCGGGGATGGTCCCTCGACCACCAGCGGCACGCGGATCGGCTGGCGGTGCTCCCCGCGCAGGCGGGGATGGTCCCGGGGCGTTCGCGTTCGCGGGCAGGGCTGCGGAGTGCTCCCCGCGCAGGCGGGGATGGTCCTTCTGGACTCACCCTGCATATATCTGTCGAGTAGTGCTCCCCGCGCAGGCGGGGATGGTCCCGTCGGGCTCTTGCCGCGCACGGGCGGGGAGCCGTGCTCCCCGCGCCTGCGGG # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.75, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1961-2814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRE010000060.1 Streptomyces sp. TML10 60_length_37270_depth_0.94x, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 1961 29 100.0 32 ............................. TCGACCACCAGCGGCACGCGGATCGGCTGGCG 2022 29 100.0 32 ............................. GGGGCGTTCGCGTTCGCGGGCAGGGCTGCGGA 2083 29 96.6 32 ............................T TCTGGACTCACCCTGCATATATCTGTCGAGTA 2144 29 100.0 32 ............................. GTCGGGCTCTTGCCGCGCACGGGCGGGGAGCC 2205 29 93.1 32 .............CT.............. GCCAGGTATGCCGTGTCCCAGTGCCCGAGCAG 2266 29 93.1 32 .............GT.............. GGCGGCGTAGTGGACGGTGTGATCATCATGCC 2327 29 89.7 32 .C...........GT.............. ACCCCGGACCGGATCAATCCCGACGGCTCGAA 2388 29 93.1 32 .............T.T............. GGCAGCGTGATCGTGGTCGGCGGCATGGACAA G [2401] 2450 29 89.7 32 .....T......T...............T CTTCGGCAGGCACGTGCAACCTGATCCGGGGT 2511 29 86.2 21 .............CC.........A...T TCGGTCCTGGGCTGGTCGGTG Deletion [2561] 2561 29 65.5 140 AGAA...G...C.G.......G...C..T TTAGGGGGACGATGCCGAAGAAGCGAGCGCCAAGCGACCGCGACGCCGAACTGCTGCGGAGTGCTTTCACTGATATGCCGGATGCAGCGGAAGTCATGAAGCGAGGGCTGCTGGCGCGGTATGAATGCAGGTCAGTGAGT 2730 29 89.7 27 .............GT.............A CGGTCCTGATCATGTGACGGTCACGGA T [2755] 2787 28 89.7 0 ....-........CC.............. | ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 13 29 91.3 40 GTGCTCCCCGCGCAGGCGGGGATGGTCCC # Left flank : GCTCCCCGCGCGTGCGGGGATGATCCCGCGAACGGTCTGGGAAACGGCGTCTTCGTGGACTGCTCCCCGCGCGTGCGGGGATGATCCCGGCGCTGGCAACGAGATCAGGGGCCACCGGGACTGCTCCCCGCGCGGATGATCCCGCTGCCCGGCGGGCCCACTGCCTTCTTCGCACCTGCTCCCCGCGCGTGCGGGGATGATCCCAAGACCAGCGCCGTCGCAGCTCAGACCCCGGTCTGCTCCCCGCGCGTGCGGGGATGATCCCTCTTCGAACCCTCCGGTCGACGTGACGCGGTACGTGCGGGGACGACCCTGCGGCTGGCCATTGGGATGGGACTCCCCCTGCTGGCGATGCAGGATCGGGGCTGCCGCCGCGCCCTCATCGCCGCTGATGAGGGACGGCAGTACGTTTCGAAAGAGGGCTTTTAGCCTGTATGTCGGATTCGGTGAAAGTCATGAAAGAGGGGCCACTGGCGCGGTATAAATCCAGGTCAGTGAGT # Right flank : CGGCCGCCAGGTCTCGACACCTGGGCCGGCCGCGCCCGTGGAGACTGCCGTTGGGCCCTTGTCGCATTGACGGGTGATAGCAGTCGGTCTCGGAAGCACGCTTTGGGCGATATGTGGAAGGCGACGGCAGCCACGTGGTCGGGCAGCTGCGGGGCGGTGGCGGCCGCGATGTCGGGCCAGCGGTCCAGGACGGTGCCGCCGACGGCCGGGAGGTCCCAGGCCCGGTCGGCCATCAGGCCCGGGAGCACGGCGGCGAACCCGGCCGGCTCCCGGCTGTCGCCCTGCACGACCCAGGTCCGGCGGTGGCGCGGGGCGCGGGCTTCGCTCTCGCCGTGCTTCTTGGCGGTCTAGCGGGCCTGGTGGAGTGCGACCCGGGCGAGGTCGACGCCGGACAGCTCCGGGTCGTCGTCGGCGGGCTGCTCGATGGGGGTGGTCGTGTCGGTCATCTCGGCCTCCTACCGGCGTCCGTACGTCATCAGCGAGCTGCGGGCGCCGCTCGC # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.90, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3026-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRE010000071.1 Streptomyces sp. TML10 71_length_23055_depth_0.93x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 3025 28 79.3 126 ........A..AG.C......C..-.... GCGCCCTCATCGCCACTGACAGGGGACGACAGTCCGTCTTGAATGAGAGCTTTAGCTGGTTTGCCGGATTCGGTGAAAGTGATGAAACGAGGGCTGGTGGCGCGGTAAGAATGCAGGTCACTGAGT G [2999] 2870 29 100.0 32 ............................. GAGGGGGCCGGCCCAAGGCTGTCGGCCTTGCT 2809 29 96.6 31 .........................C... AGCTGGCCGTGGCTGTGGGCCTCGGCAGTCA T [2784] 2748 29 89.7 32 .............AG..........C... GGGGTGGCGCTCCAGGTCCACGGCGGTGACGT 2687 29 100.0 32 ............................. TGTCCTGTGCCTGGGTCAACCACGCCTGATCC 2626 29 100.0 32 ............................. GGCTGGCCGTCGGGCCACAGAGCGGAGCTGAA 2565 29 96.6 32 .............A............... CACCGCCGCAAGTACCACTGACACGACGAAGA 2504 29 89.7 32 .............CC........A..... CAGGGTTTCGGGACCCGCCGCATCAACGCCAT 2443 28 86.2 32 ....-........CC.T............ CGGGAGTCCGGCATCCAGGCCTGCTGGGGGTG 2383 29 93.1 32 ................T......T..... CGCCCGCACCTGCTGATCGCCGACCGCAGCCC 2322 29 93.1 28 .............C............T.. ACGGTCCTGATCATGTGACGGTCACGGA 2265 27 86.2 176 ....-...T.....G......-....... GGCCGCCAGGTCTCGACTCCTGGGTCGACCGCGCCCGTGGAGGCTGCCTTCGGGTCCTTGTTGTATTGACGGGTGACGGCAGCCGGTCACGGAAGCACGCTTTGGGCGATAGGTCGGATTCAGTGGAAGTCATGGAAAGGAAGCCGATGGCGCGGTAAGAATGCAGGTCAGCGAGT 2062 29 96.6 32 .C........................... GACGAGGGGCCGAAGGAGCACCCGAGCAACGG 2001 29 100.0 32 ............................. GTGCGCGTCATCGTGCCCTCCGGTACGCCGGT 1940 29 100.0 32 ............................. ATGCACAACGTGACGGCAGGAAGGACGTCAGT 1879 29 100.0 32 ............................. TCCCAGGTGACCGCGATCTCTGCGATCCCCAG 1818 29 93.1 32 .............C...C........... GCGTCGCCCAGGGCCTCGCCCTCGTCGAACAC 1757 28 86.2 149 A.......-...........AT....... GTCGGCAGAAGCGGGAGGCTGCCACCGCGTCCCCGTCGCGTGGATAGTGACCGATATTCAATTAAACGCATGCTCTGGGTTGAATGTCGGATTCGGTGAAAGTCATGAAAGAGGAGCCGATGGCGCGGTATGAATGCAGGTCAGTGAGT 1580 29 100.0 32 ............................. GCCCGCGTAGTAGGCGGCATCCGCGGCGGAGA 1519 29 96.6 32 ............................A GAACGGCGACTCGTCGGAGTACTCGGCCTGCT 1458 29 100.0 32 ............................. CGGGCCGCCGAAGCAGCGTCCCACTCCGGTGC 1397 29 96.6 31 ........A.................... GCATCCGCCTGTACTGGAACCGCACCTTCCG T [1371] 1336 29 100.0 32 ............................. GTGCGCGAGGAACAGGTCCACGGCAACGCTTT 1275 29 93.1 32 .............C...C........... GCGTCGCCCAGGGCCTCGCCCTCGTCGAACAC 1214 28 89.7 149 A.......-.....G.............. ATCGGCAGAAGTGGGAGGTTGCCACCGCGTCCCCGTCGCGTGGACAGTGACCGATATTCAATTAAAAGCGCGCTTTAGGCTGCATGTCGGATTCGGTGAAAGTCATGAAAGAGGAGCCGCTGGCGCGGTATGAATGCAGGTCAGTGAGT 1037 29 100.0 32 ............................. TGGTCCGCGGTCGCGCCGAACCAGCCGCCGAC 976 29 96.6 32 ............T................ GAAAGCGGCCTGCTCGATGGGCCGCTGCCAGT 915 29 96.6 32 .....................C....... GCTCACGGGCCCGGCCAGGTCGTCTTGGGGGA 854 29 100.0 32 ............................. CCGGACAGGGTGACCGTGTCGGCGTCGGCTTC 793 29 100.0 32 ............................. AGCAACGTCGGCGTCAGAGGCGGAGAGGCGGG 732 29 100.0 32 ............................. TGGATTGTCGACGGCGCCCTTGCCTGACCCCT 671 29 100.0 32 ............................. TGGATTGTCGACGGCGCCCTTGCCTGACCCCT 610 29 100.0 32 ............................. GCATCGATGCCTGCCTTCGCGTCCGCCGTGTT 549 29 100.0 32 ............................. CCGTCCACCAGCCGGATGTCGGCCTGGGCACC 488 29 100.0 32 ............................. ACGCCGCCTCCGCAGGTCACTGCATCCGCTCC 427 29 100.0 32 ............................. TACAACGCCACCCCCCACCGCACCACCACACT 366 29 96.6 32 .................A........... GGCAACGTCCAGTACCGGCTGCTCAACATCCA 305 29 96.6 32 .........A................... GGCTGCATCTAGCATCGATCACCCGCCGCGCC 244 29 100.0 32 ............................. CCGCGCAAGGTCGACGCCCCGCAGCTCACCGA 183 29 96.6 0 ........................A.... | T [156] ========== ====== ====== ====== ============================= ================================================================================================================================================================================ ================== 40 29 96.1 44 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGTTCACACTTCTACTCTCTACTGAGACCCGAATCGTCGGCCTGCTGTGTTGCTCCATTTGGGCGGAGTGCCACCTGGGCCAACAGCGAACCGCTTACTCTCGCGCTTGCCGCTTGCGGTGGGGATCAAATCAAGTCGGAGCGGTACAGCACAGAAGCACAGCAACCGTGGCAACAATGGGTGACCGTCCAGGGCCGGCAGCATTCCCTTGACCGGGAGGGATAATCTCAGCGATCTCCGCGCCGGTAGTTCGCATCGAGGACGGTCCGACGGAACGCGGAGTGGACGCGGCAACGCTTGTCAAGACCGCATAGGGCGGCTGACACCAACGTCTGACACCAACAGGCGCGAATAGCAGCGGTCGACGCCGGACCTCAGTGGGTGATCGACCGAGGCACAGGGGCCGTTGGGGGACGTTGACAGAACTCCGTGATCGACCTGATAAGGATGAGCACAGAGCTCAAAGCCTTGGCCCCGTCGCGTGTCCGAGCTCACCCACT # Right flank : CTCACCGACATCGTCACCGGCCAGACCGACTACTGCTCCCCCGTGACCTGCCAGCCCAGCGGTCCTGCACCCGCGGGTACGCGGTGCTCCTTCCAGCGACATGGCGGCCGACGCCGCCACGGCGTGCTCCCCGCATGGCTCTGTTCACGTCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5890-5314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRE010000071.1 Streptomyces sp. TML10 71_length_23055_depth_0.93x, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5889 29 100.0 32 ............................. CCCGACGCCGCAACACACCCAGCCGGCGCTCC 5828 29 96.6 32 .........................C... TCGTACGGCGTCAGGGTCTGCGTGCCGGTGGT 5767 29 100.0 32 ............................. GTCAACACGCTGTCGGACGGCGCCGTGTACAC 5706 29 96.6 32 ....................A........ GACGAGCGGGCCGCCGACAAGGTCAAGGGCAT 5645 29 93.1 32 ..C.....................C.... GTGGTCGAGATGACCGCGATGCCGGACCAGAA 5584 29 93.1 30 ........T..............A..... CGCATAGTGCTGTGCCATGCGTCGGCTCGG 5525 29 96.6 32 .........................C... ACGTCCGGGGACGCGGCCAGGCCGAAGCCGCC 5464 29 89.7 32 T......T.................C... GAGGCGCGCGGCGTCAACGACTGCTCGGCGAG 5403 29 93.1 32 .............CC.............. GCCTTCAACCCGATGGAGACCCGGGACATCGA 5342 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GGCACCACCACGGCGACGGCGACAGCGGAGGTGTGGCCGGTATCTCCGCGGTGTCCCGCCTTGGAGAGGAATCTGTTGACTGTCTGATTCTGTACCAGCAGCCAGAAGGCACGATCACCTACGACCACGAAGGCCTGCTGAAGGCTGACCTCGGCCAGCGCTCCCCCGGCCGAGACCTGACCGCGTACCGACGCCAGCAGAAAGACCTCCTCGCCAACACCCTCGCCATCCCCACACGCTGGTGGAACGGCCGACGTGGCCTTCAGCCGATCACGGACTGGCCCAAGCATCCCCAACCTGCATTGAGGGCGAGGTCCGTCATCCTCATCGCTCCGGACGGGGCGTGCCTCAGCGGGCCCGTGGGCAGACTCCGTTACGATCACATCACTGGGCTGGAACGCACCTAACCAGCCCAGCCCTCTACGGGAGAAGATACATCTCTAGCCCTACATCGTCGGCCACAATCATCGCAGCGGCCGCGGCCACTCCTCAGCCGCCTC # Right flank : ATGCGGTACTGAAGCTGTTCACGCAGCGGGGGGAGGAGCACCGGAACGAACAGCGACGCCGCCGCAGCGATTGGACCAGCCCGCCGACCAGGCTCTGCCGACAGGGTCACCACCCGCTTGACGTGTCTGTTCACGGCACACCCTCGTCATCCCCCGGCCAGCACCACCTTTACACCCACCAGTAACAGCACAGCGGGGGCGCGGAAGCTGTTCCGGTGGGTGGCCGACGCCGCAGGCTCGCCTGGTCATAGGTCAGGACGGGTTCAGGGGGGTAATGCCGGTGCCCGTGTACAGCCCGGGTTCCAGAGATAGGACGGTGAGCGGTTCGCCCGCCTTCACCGCCTGCCAGGCGATCGCCGCCGCGTGTGCCACCGGCCAGTCGACGTTTGTCCACTCCATCGCATCCACCGCATGCGCCGCGGTGAACGGCACGTTCTCCGCGAACCGCAGGGACGCCGCGTGCTTGCCCGCACCGGCGACCTGCCGTTCGGCGGCCAGCA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCGTGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //