Array 1 107818-106341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNN01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1574 NODE_3_length_344493_cov_1.24399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107817 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107756 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107694 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107633 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107572 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107511 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107450 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107389 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107328 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107267 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107206 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107145 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107084 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107022 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106919 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106858 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106797 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106736 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106675 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106614 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106553 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106492 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106431 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106370 29 96.6 0 A............................ | A [106343] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125442-123949 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNN01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1574 NODE_3_length_344493_cov_1.24399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125441 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125380 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125319 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125258 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125197 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125136 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125075 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125014 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124953 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124892 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124831 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124770 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124709 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124648 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124587 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124526 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124464 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124403 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124342 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124281 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124220 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124159 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124098 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124037 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123976 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //