Array 1 3917-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGQ01000105.1 Xanthomonas oryzae pv. oryzae strain IXO621 contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3916 31 100.0 36 ............................... GCATCAGAACCGGCCGCGCCCTTCGAATAGTCACCC 3849 31 100.0 36 ............................... TTTAAGACAAAACCCGAGTTTGCCGGCGACTGCTGG 3782 31 100.0 36 ............................... TTACCGAGCCGCTTAGCGATCTCGCCCTTCTTGAAA 3715 31 100.0 34 ............................... AGCGGCCGGACGGCATAGTACTTGACGACGACGC 3650 31 100.0 34 ............................... TCTTCACCATGACCGGCGTCGCCATGCCTTGCAG 3585 31 100.0 34 ............................... CCCGACGCCTGCGGATAGGTGGAGCTATCCCCGC 3520 31 100.0 35 ............................... GCATACCGGCGACCGACTTCGAACGCTTCAAACTC 3454 31 100.0 36 ............................... TCGAGCGCCGCCATCCGGCGCTTCGTTATGAGCTCG 3387 31 100.0 37 ............................... GCCTCGTGATTAGGCGCATGCGTGGACGCCCGTACAC 3319 31 100.0 35 ............................... GAGCGCGGCCGGCACTCAGGCATCGCAACCGACAG 3253 31 100.0 35 ............................... AAGGTCCGTCCGTATTACAGCTGACCAACCCAGCA 3187 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3122 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 3057 31 100.0 38 ............................... CTCCTCGAGGCGAACGATTGCCTCGGCGAACACAGCCG 2988 31 100.0 34 ............................... CCGTCCCGATACCCACAGTAATTGCATTGCACCG 2923 31 100.0 33 ............................... GGATTACTTTACGAGCACCCAAAGAGTTGGCTT 2859 31 100.0 33 ............................... CTGCGTCAGATCGGCGAGCGGATCGGGCGGCGG 2795 31 100.0 34 ............................... CTGCACCGCCACCAATACCGCCAAGCACAGTGCT 2730 31 100.0 34 ............................... ATGGCCAGAAAAACACATTGACCATGTGAATGCA 2665 31 100.0 34 ............................... AACCAGTGGAGAGGCAAGAATGAATGCAGTATTT 2600 31 100.0 36 ............................... CAATACACCCCAGTCGCGCCAGAGGTGTTGTTAGAC 2533 31 100.0 35 ............................... CAGCGCAACATGGTGACGGTGCTGGCGGAAGAGCG 2467 31 100.0 36 ............................... AACGACAGTGCCAGCGTGGCTGAGAATGCCCCTATG 2400 31 100.0 35 ............................... CACGGGTACAAAGTCTCCATCATCCGTCTCGCGCT 2334 31 100.0 35 ............................... CCAGACCAAAGGAAGTCGTTCCTTTGGTTGAACAA 2268 31 100.0 35 ............................... AACTGGGCATCACCCAAGCAACGCTCAGCGCTACT 2202 31 100.0 35 ............................... GTCCGCCTGGACCGGTCCGGCTGTTGGTACACTGC 2136 31 100.0 35 ............................... GTTCGATGCAAATGGAATTGCAACAGTAGACGCAC 2070 31 100.0 34 ............................... GTCATCGTCGTTCCCGTCCCGATACCCACAGTAA 2005 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 1940 31 100.0 35 ............................... AATGTATACAGGTGAAAATTCAGTGGCGCATCGAC 1874 31 100.0 35 ............................... AGCTGCAAGGGCGCGCACTTGTTTGGCCAACTCCG 1808 31 100.0 34 ............................... CTGCACGCGGTTGAACGTCGTCCACAGGTCCGGC 1743 31 100.0 33 ............................... CTGTCAATGACTCTTAGCCCATGGTTGCGGCGC 1679 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1613 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1548 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1481 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1415 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1348 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1282 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1216 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1151 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1087 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1022 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 957 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 891 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 825 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 759 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 695 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 628 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 563 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 498 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 432 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 367 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 302 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 236 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 170 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 105 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 59 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //