Array 1 5498-4771 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFU01000028.1 Selenomonas artemidis DSM 19719 K341DRAFT_scaffold00027.27_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 5497 35 100.0 34 ................................... TTGACGTAGCCGTTAATGACGTTCGCCGCGTACG 5428 35 100.0 35 ................................... ATAGACGTACGGGTGATTGCCATCTTGGTCTCGTT 5358 35 100.0 34 ................................... AAGCCGTAATAACCTTGAACTATCAGTTTCACCG 5289 35 100.0 34 ................................... TAAATTAAGGTGATTTGCTGTACGTGACTACTTT 5220 35 100.0 35 ................................... TTCCCATTGGGCGCCAGGAGTTACGACTCGTTTAT 5150 35 100.0 34 ................................... AGAACGCTCGCGGCCATTGAAGCGCGACGTACGG 5081 35 100.0 34 ................................... TCTATTGGAGTCATGTCCCCGAAGATACCTCTAG 5012 35 100.0 34 ................................... TTTAATGAGGAAGTTAAAAAGCAGGTAATAAGGT 4943 35 100.0 34 ................................... AGAAGCACTATGTTTTTCAACTTCCCGCCGTTTT 4874 35 100.0 34 ................................... TTTAATGAGGAAGTTAAAAAGCAGGTAATAAGGT 4805 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 11 35 100.0 34 GTTGCACAGGCGAATACCGCTTGCGGTATTGAAAC # Left flank : TCTTTCAAGGCAGAGTTGCGCAACATAAGAATTTATCAGTGTTTCCTAAATTATTGATTCGAGGGAAAACGTCGCGCCTCCTGCAAATAGAGCAAAGAAACCGTTAAAAAATTTGAAAAAGGAAAGAGAAGGTATATCATCTTTTATCATAGAACAAACGAAAGCAAAAAGATGGAATATAGTATAATAAAAAGAAAACAATTATACTTGTCAAAATCGGCACACATATAGAAAACCTCAGGCGAACCCTGAGATCCGCATTCTACCGTCGAGGTTTTCGATCACCTCACAAAAATATGGGAAAAGAGCGGACATATTAGCATATTTTTCCAATATACCCTCTCCAAAAGGAAGAAAACCTTGCGAAAAAGGGAAAAAAGTGATAAAGTACACACATCGGATGAAAACCTCCGCCGAGACCGGAGAGCCGCATTCCACCGTCGAGGTTTTCGAAATGTACCGATTTACGCTAGCACCCGCGCGGCTTCAGCGGGTATGCT # Right flank : TCCATGAATTGGCTCTCACAGAGGTCAATCTCGGTTGCACAGCTTACATATTTCATACAAAAAATACCACTCGAAAAATCGAGTGGTATTTTTGCGTGGAGATGCAATGCGAACATCCTTACAGGGAAAACCTTCTCAAAACGCTTTGTTAATGATTCCAAAAGTATGAGATTTAGCGTATAATCACTATGATGATTTGAGAGCTATTTTAACTACAGGGATTTGCGCATAGATATTAGGAAATTCGTGATGTGTGAGCGAGAAAGGGCGTGCTCCCAGGGATGAATGAGAAGCAAAAGGCGATACTGGCAGAGCTCAACGAGCAGCAGCGTCTTCCGGTGCAGGAGTATAAAACACCGTCGCTCATTATCGCGGGGGCAGGGGCGGGCAAGACGAAGACGATTGTCTCTCGCACTGCCTATATGATTGAGGACGGCGTGTCACCCGCTAATATACTGTTGTTCACTTTTACGCAGAAGGCTGCGGATGAGATGCGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACAGGCGAATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : NA // Array 1 11525-10761 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFU01000024.1 Selenomonas artemidis DSM 19719 K341DRAFT_scaffold00023.23_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 11524 31 100.0 35 ............................... AATGCGGAGAAATCCGCAACAAAGGAGGACATCGT 11458 31 100.0 36 ............................... GAGGAAGAAAGCCTGATTTGGACCGTTAAACCGGGT 11391 31 100.0 35 ............................... GAAACGATGTGTTCAAGGTCGGCATGACGCGGCGT 11325 31 100.0 37 ............................... TTATATCTCCCCACGCCGAGATACAAAGATCCGCGGT 11257 31 100.0 36 ............................... CTCCAATCTGTGCGCTGTCGGTGTACTGCCACATGT 11190 31 87.1 35 ...A......GA....T.............. ATGAATCGGGAGATCGGCATCTTTGCGAAACTCGT 11124 31 87.1 35 ...A......GA....T.............. ATCTTCGATTTTTACAATGATACCTTCGTTGAGGT 11058 31 83.9 36 ...A......GA....T......G....... TTCGCTGCGGATATAGCCAGCTCGTTGTGCTGCGGT 10991 31 87.1 36 ...A......GA....T.............. CCTCCTTAAACCTATGTCGCCTTATGCAAGGAACGT 10924 31 100.0 36 ............................... TACGATGCCGCCCAGCGGAACCTTGCTCGACACGGT 10857 31 83.9 36 ...A....T.G.....T..........C... GCCGACATACGTGACAACAAGGAATTTGAAGGACGT 10790 30 87.1 0 ........A.G-.....A............. | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 93.0 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CG # Right flank : CTGCCACTCTTTGCGCGCTTATTGGCGATGATTGTCGTACTCCTCGAGGCACGCGCGGGTTGAAATGCCGAACAGCTCTACAAAGTCTATGTCATGTTCATCGCGCTCGCTCCAGGTGGATGTGCGGATTTGATCTTGCCTCCGTGTTCGTGGACAAGATCAAAACATTCAAATCGATCGATATTTTCCAAGGGCTTTAGAGATTCTGCATTGCATGGATACTTGTATGAAAAGCCTTTTGTTGATCGGCTTTTTGTTGCTTAATTTCTTTATGGAAAATTCTGCGATGCGGCGTTGCTGCCAAGGTGGCGATGGGGAGCGGACGAAGGAGATGCGTGCGGATGCTTTGACTATGCGGATCCCTACTGCGTGATCTTGGGACGGAGCCACTGATCTCAATGCGACTCCTGTTACAGCCTGAGGATATGCGCACAGGAAATCAATAGCTCGTTGCCGATACCTCTGTTTTGTTTATAGGCCACACATCACTGGGCTCGTGT # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCCGCGAGGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53676-53076 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384552.1 Selenomonas artemidis DSM 19719 K341DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 53675 35 100.0 36 ................................... GAAGTTTCTGGGTGAGATACCAGAGAGCTTGTTTAG 53604 35 100.0 36 ................................... TTTGCGCCGTCCTAGCAGGGTCGGCAGGGGCGTTTT 53533 35 100.0 34 ................................... CCGCGACCTTTTGCCTCTCCGTCCATCAGAAACA 53464 35 97.1 35 ..................A................ AAGACATCTGCTCAATACCAGAGACGTCCTTAATT 53394 35 100.0 40 ................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 53319 35 100.0 34 ................................... AAAAGCGCCCCGCAGGACGCTCAAATCTCATGAT 53250 35 97.1 35 ...G............................... TCTGTTTCGGCGAAGGACAAGGATCCAAAACCGCT 53180 35 94.3 35 ...G......T........................ CCCGTAATATTTGGCAGTCCCGCCTCTACGCTCCC 53110 35 85.7 0 ...G.......................T...CGC. | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 97.1 36 GTTACACAGGCGAATACCGCTTGCGGTATTGAAAC # Left flank : CTTCGTCGACGTAGGTCTTAAACTACGCCGGCGCTTGTGTTTCTCTCATTCCCTGCTCTGCATCCAAACTTCCGCGTCACTTACATTCCCCCCTCGCACAACATCACAAATCTCTCAGGCGGTTACATTCATGTAACCGCCTTTTACATTAAAAATAATAAACATTTCATTAATAAAACTCCCTATATGTTCGATAAAAACTCTAATTTTCAGAATTGGCATCCACACAGAAAACCTCCCGCGAACCCTGCGACCCGCATAGTGCCGTCGAGGTTTTCTGCCCACGCGCCAAAACATGGGAAAAAGCCCCATAGAATCCCCCGAATTTAGCAAAATACCCCTCAAAATGGCGAAAATACATTGCCAAAAAGGGAAAAAATCGCTATAATGTGCATATCGGGCGAAAACCTCCGACGAGACCGGAGAGCCGCATTCCACCGTCGAGGTTTTCAAAATGTACCGATTTACGCTAGCACCCGCGCGGCTTTAGCGGGTATGCT # Right flank : CGGTGGAAACCATTGATTTACGCGCGCGCTGTAGGGGCACGGCGTGCCGTGCCCACGTGCGATCCATGCGCGCCTATCGTTTTGTGCGATGCATGGAGACGGCGGGCGTCGTGGAATCCTTGATAGCGGTTTCTGTCGTTCTATGTTGGTATGTATCGGCGTAGAGACGCTAGTTGTTAGGTGTTGTTCGCTTTGCTATGCCGCCGTATATCGATCAAGGGCACGGCACGCCGTGCCCCTACGAGGGCGGTATATTGCGTAGCATTTGCGAGGATATGTACCGCTTGCGGTATTGAAACTACGAGATGTTCGCCTCATCGAAATCAAAGAGTGGTTGCACGGGCGAATACCGCTTGCGGTATTGAAACATGTGAGGAATGCTCTGCCCTCCGTAGAAGTCATGTTGCACAGGCGAATACTGTTCACGGTTTTTATGCCTCGGAGCTGTTGTATCAACGCGCGTCTCTCGTTGCGGAGGGCGCGGTACATGTAATGTGTCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACAGGCGAATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //