Array 1 775314-775589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 775314 29 96.6 32 ............................G TCGTCCGGGCCGGGCGAGGTATTGAACGGGGT 775375 29 100.0 32 ............................. CGCGACGGCGAGCAGCTCTCCCGCGTCGAGGT 775436 29 96.6 32 ............................G GGACCTGCTGTGTCTGACCTGGAACCGACGCT 775497 29 100.0 35 ............................. TGGCCCTCGGCCTTTTTGGCGAAGCGGAGACCGTG 775561 29 86.2 0 .............A......A.C..C... | ========== ====== ====== ====== ============================= =================================== ================== 5 29 95.9 33 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGACCTGGTGATGCGCCCTCGCTTGGCCACGCGGCCGACGCGGCGCCACGGTGACGCCGTCCGGGACCTGTTGGAGGCGGAGAGGCGCGCGCCGGAGGAGGTGGCCCGCCCTTCCGTGGTGCGGCTGGTCGGCCGGTTGCTGGAGCTGGTGCCGTCACCGGGGCCGGAGTTGCGCGGCCTCGCACAACGCTGTGGACTCCCCGCATGACGCGGCCCGCCCTCTATCTGATCGCCTGCGCGGCAGGCCCGGCCCAGTACCTCGACGACGGCGTCCGCGCCGCGCAAGCCGCGGGGTGGGACACCTGCCTCGTCCTCTCGCCGACCGCCGCGACCTGGTGGGGCCCACTGGTACAGGGACGAGCACCCGACTCATGTCCCTGCCGAGTCCATTTCCTGGCATGCTGATGCCGTGCTGAGGGGAGGGCGCGTCCGAAATGCCGGAGTCGCAGGAAGTGATGGAAATCCGCACTCCGGCCCCAGAAATCCCCAGGTCAGCAAGT # Right flank : CCCGAACCGCCGGGGCTGGAGCAAGACCTGCCGCGCTCGCCGGGCGCGTGGGTCGCCGGACCTTCCCTGGGAGGGCGGTGAAGGCTCCCAGGGAAGGGCTCCCGCCCCGACTCCCTTGCTCCGCACGGCACTTGAAACGCTCTCACTTGAGCGGCAGCGGACTCTGCTGATAGGTGTGGAGGGGGTCGCGGAGGGCGCCAGGGTCCTTTGGGGTAACTGTTTTCGTGAATTTCTTCACATGAGAAAGTGCCCGCTGGAGGGGTTCTCCGCCCCGGAATCCAAGGTTCCAGGGGGAGTTCGGGGGGTCGATTGCCCCGTCGGGTGGAGCGGCGCGAGGGAGAGGCGCGGTCGGCTCCGCAGTGGTTCAGTCGGGGGGTTCGGGATCCCTGCTGCTCAAGGGGTGCGTCAACGGCTCGTGGGGCCGAGTGGTTCCCCCGGTGCGCTGTGGGGTCGATCACGGGGCGGCGGAGTGTAGCAGAGGGTGGGGGCATCCTTGTGAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 821440-821045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 821439 29 100.0 32 ............................. AACACCGAGGAGAACACTCCCGGGACCGAGGC 821378 29 100.0 32 ............................. GTCCCGGGGATCGACGGGCAGGCCGCGGCGGT 821317 29 96.6 32 ............................C AGCCTCAGCGGCCGCTTCCTGCCCGAGATGGC 821256 29 96.6 32 ............................C ACGGAGTCACCTCGTCGGAGAAGACGTTCACT 821195 29 100.0 32 ............................. ACCGACACCGCCCCGCCCTGCCCCTACCGGAG 821134 29 100.0 32 ............................. TCCAGGGCGGCGTAGCTGAGGCCGTAGTGGGC 821073 29 82.8 0 .............C.......C...A.AT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : TTCGCCCTCACGGTAGCCGTACATCTGGGCACGGTCGGCGGGTCGGTTACCTCGTCACCCTGGATCAGGATCTCGCCCGTATCGATGTCCGCGAAGATCGCCGGACACCCCGTCTTGCCCGAAGTGCTGCCCACGAGAGCCAGGTTCCTCGCCATCGTCCTACTCCTCCACGACAGAACGTTGTGGAGTGAGGCACCGTAGGCAGCGGAGCGAGAAACAGAGAGGCCGCCCGGCAGACGCCGGACGCCTTCGCTGCCGCGCAGCCACCGGACGAGCCGGCCACTTCCCCAGCCACCTGTACCAGCGCCACCAGCACACCCCACCACGCCCACCACTCCGCCTGCTCCACCGCTGCCTCCCCTTGGTCGTTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGACGAGGTAATGCTGAATACGCCATTCCGCGAGTAACGTCGCTGGTCAGGAAGT # Right flank : GACGAAATCCCCCCTGCCCGGCCAGGTGCGCCCGGCCAGGGGCATCCAGCCGGCGAAGCCGAGTAGTGCCAAGGCGAAGGCGCTCCCAGCGAGGGCACGAGACAGGGCGCGGTATGCGGATGCTCGCCGCGCCGGGGGGCGGAGGGGAGACGGCGCCTACCAGCACCCACAAGGGCTCTCCTGCCGCGTCCCCCTCGGCTGAGCGGAGCGCCGGGCAGGGGCGCGTCCCGCCGCGGCGGCATGCCCGACAAGAGCCTCATCCCAGGTCGGCGGCATGCCCGGCAGGCGGCAGGAGCCTCATCCCAGGCAGGCGGCAAAACCCGGCAAGAGCCCCCTCCCAGGCAGGCGGCATACGCGGGCAGGAGCCTCATCCCCGCCGGGGCGGCATACCCGGCAAGAGCCCGTCCCAGGCGCGCGACACACCCGGCAGGAGCCCCGTCCCAGGCGGGCGGCATACCCAGCAAGAGCCTCACCGCAGGCGGGCGGCACACCCGGCAGGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 872747-873263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 872747 29 100.0 32 ............................. GACCCCGAGGACCCGGCCGAGGCGCCCGAGGA 872808 29 100.0 32 ............................. CGCGGGGACGGCGGCCGGGCCGAGGCGACCGC 872869 29 96.6 32 ............................T ACTGCGGGCACCTCACCCCCGACACCGAGGGA 872930 29 93.1 32 .....................A......T CGGCATCAGGCAGCCCTCTCTTCGCGGGCAGT 872991 29 96.6 32 .....................A....... CTCGTAGCGGCGGGCATCGGCCCGGCCGGTGC 873052 29 93.1 32 .....................A......C GGGTCCGGCGACGCGCGGCCCGGCGTACCGTA 873113 29 96.6 32 .....................A....... CCATGCCAGACGCCGGGCGGGGCGCCGTTGTC 873174 29 93.1 32 .....................A......C CGAGACACCGGGGATGCTGGACACGGCCTTCG 873235 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : CCCCGGGGCGTGATCTGTCGGGGCGTCGTTGGTGCGAGGCACTGCGGTACTGCCGGCTTGTGATTGCTGAGGACTGGCATGCCGAGTTGTGGCTCGACGACGCCGACAGCATGGCCACCTACTCGCGCGTCTGGCGCACTCTGCGGGAATCCGCCGTGTACGGCGCCGACGCACACAACGTGATCAATGCGGCACGGCGGGACCTGAACGCCCGCTGAAGGACCTTCGACCGGCGGGCCGGCGGCGCGCTGACCGAAGGCACGAGCCCTCAACAGCCCGACCACGCCCACCGCCACCCGCACGAACGCCACCAGCACGGCCCACCGCGGCCACCGCTCCGCCTGCTCCACTGCTGCCTCCCTTGGTCGTTGGCAGGACCGTAGGCAGGACTGGCTGTCGGGCGTCGGGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATGCGCCATTCCGCGAGTAACGTCGCTGGTCAGGAAGT # Right flank : GACGCAGCGCCACCCGTCGACTTTGATCTCGTAGGCGACATCACCGCGGGGCAGGTCCTCGACCGGGGCGGCCAGTATCGGCTCAGGGACACGGACACTGCCAGCCGTACCCGGCGCTTCATGGCGCCCGTACCGCCGGACGGGCGGGGCCATCACCCCTGGCCGCAGAGCACCGCCTGCACGGCGGAGCCGGACTCACCCCACTCCCGACGGGCACCGGCTCGGCGACTGGCTGAACACCCAGCGAGTGGAAACGCCGCAAGAGCAGACCCGATCCTGCAACTGAGGGGAGGAGGCGTTCTTGGAGGGTGAGGCGTTCGAGGACGCCGCCACCGACGGCATCGGCCTGTGACGCTGGGACGCGTACTCCGGGCGTTCACCGGCGCACGGCGCCGGTGAACCCGGCCGGTCAGCACCTGACGGGCGGTGCGCTTTCCGGGGCCTGCAGCAACTCCTGAGGCAGGTAGGCGGACCGGGTGCCCAGATGCCATCCGTGTACC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1385963-1386593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1385963 29 93.1 32 ...T........................G GGCGCCGCGGCGGACCGGCAGCAGCAGGGGGT 1386024 29 96.6 32 ...T......................... CTCGGCGCGGTCCCGGAACAGCCACGACCACG 1386085 29 96.6 32 ...T......................... TCGTCCTTGCGGCAGATCCGGGCGAGGCGAGC 1386146 29 96.6 32 ...T......................... CGCCCCGCCCACTCGGCACACCGCCGACACCA 1386207 29 100.0 32 ............................. GCACTCGTTTCCGCCGCCGCCGCTGTAGGTGC 1386268 29 96.6 32 ............................G CGGAGGCCGCCCGGATCGTGGAGTCCGCCCGC 1386329 29 100.0 32 ............................. TCGGCAGGCAGCAGACCCCTGTCGATCGCCGC 1386390 29 100.0 32 ............................. CCGCCCGCCCACGCCGCCCGTTCGGAGTGGCT 1386451 29 96.6 23 ............................G GGCAGGTGCCGGTCGAGACCGTC Deletion [1386503] 1386503 29 93.1 32 ..C.........................G AGGGGCCGTGCGGCGTCGCGGTCCGGAGCGGT T [1386507] 1386565 29 89.7 0 .............A...........C..T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 31 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGACCTCCGCATCCGCTCGTAGCGGCGTCAACTGGCCGCGGGTCACCGGCCTGTGCAGGACAGTGGGAACGCGGAAGTCTCGCCTTCCAAGGCCATCCGGACTGGCATGCCGAGTTGTGGCTCGACGACGCTGACAGCATCGCCATCTACTCGCGTGTATGGCGCCGACGCGCACAACGTGATCAATGCGGCATGGCGGGAGCTGAACGCCCGCTGAAGGGTCTTCGGCTGGCGGGACGGCGGCGCGCTGCCCGAAGGGCCGAGCCCGCAACAGCCCGACCACGCCCACCACCACCCGCACGAATGCCACCAGCACGGCCCACCGCCCCCACCGCTCTGCCTGCTCCACTGCTGCCTCTCCTTGGTCGTTGGCAGGACCGTAGGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATGCTGCATTCCGCGAGTAGCGTCGCAGGTCAGCAAGT # Right flank : TCCGTCCGCCGGGCCCCGGTGACAGCCGGACAGCGCCGGGCCGTCCTTCGGTCGCCGAGGGAGGGCGCCGGTGCTTTTCCATGCCCGCAAACCGGCCTCCGACCAGCAAAAAGCCCTCCCGGAGGAGGGCGGTCGGTGGCGCCCCCGGCAGGACTCGAACCTGCGGCCAAGCGCTTAGAAGGCGCCTGCTCTATCCACTGAGCTACGGGGGCCTGCCTGTGTCGCGGGTGGGCGGGCTCGCACGTCCCCGGAGTGACCACGGCGGGGTCAAGGATAGGGGGACGGGTGGCTCGTCCTGTTCGCTTCACGTCCGCGACGCCTTGTGGAGGTTCAGTGAAGCGGTCCCGATAATCGCAGGCGGGTGCGATTTCTGCAGCGCTTTTGGCGCTGTGAGTGGCGGGTGTTGCGCAGTCGTTATGGGTGCGGTCCGCATGGAGAAGGGCCAATCGGAGCGAACAGGGCGAACGACGCCAACGCGTGTCGAAAGCATCCATTTTTCC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : GTGTTCCCCGCACGCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3072248-3071424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3072247 29 100.0 32 ............................. TCGCCCTCCAGGCCGGCATGCGCCGTGAGCCC 3072186 29 100.0 32 ............................. TTCGACCCCCAGTGAAGCGGTCGGGATCTGGT 3072125 29 100.0 32 ............................. CCCTGGTGGGGCGTCTCGATGGCCTGGGCCCT 3072064 29 96.6 32 .....................A....... CGGTGACAGACCTTCACGTCGTCTGGCCATTA 3072003 29 96.6 32 .....................A....... GCTCCGGGGGGCAGCCAGCCCAGCGAAGCTAC 3071942 29 96.6 32 .....................A....... TGCGGACTCCTCGCCCCAGCCCAGTCCGAAGT 3071881 29 96.6 32 .....................A....... TTGCCGGTGTTGAGGTTGGCGACCCCGGTGAT 3071820 29 100.0 32 ............................. CCAGAAATGTGCCCGAGGTGCGGAATCCAGAA 3071759 29 100.0 32 ............................. GCGGCCGTGGCGGCCATGTCCCGGCCCTCGTC 3071698 29 100.0 32 ............................. GAAGCGAAGGCGAAGGACGAGGAGTCCGACAA 3071637 29 96.6 33 .........................C... GGCTGCGTCCAGCGGGGCGCGTGGAACGTCGGC 3071575 29 93.1 32 ............G........T....... AACCCGCGCCGCTGACCGGCGGTGAGAGCCAT 3071514 29 86.2 32 ............CAC......T....... GATGGCGTCCTTCCACGTGAATCCGGCGCCGG 3071453 29 89.7 0 ...........AC............C... | T [3071430] ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.6 32 GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CGCGGACGAGCCGATCTGGTGACCGTCATCGTCCTGGCCAACTGCCCCGCCGGACTGCGTGGTTTCCTCACCCGGTGGCTCCTGGAGATCTCTCCCGGCGTCTTCCTCGGCTCCCCGTCCGCCCGCATCCGCGACATCCTCTGGGACGAGGTCCGCACCTACTCCGGCCGAGGCAGGGCGCTCCTCGCCCACAGCACCGACAACGAGCAAGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCGCAGCACCCCAGGAACCCGGCCCGGCACCGACCACTCCGGCAGCGCCGAGCCGACCTCCCCAACAGGGGTGGAGCAAGGCGGCGAAACGACGGAGATCCAGAGGACGGCGATGAAGCAGCTCGGTGGTGTATGCACCGACACCCCTGAAAGGCCGGAACTTGGCAAAGTGAGTAAAATCCCTTCCCCGCTGAGATGAAACCCCTGGTCGGCTCCT # Right flank : TTCACGTCGCCCGGCCTGATCGTGAAGCACTGGTGGCCCCCGCACGTGCGGGTCGAGCCGGAACTCCCCCCCCCGGCCCCCGGAGCCCCCCAGAGCCCCCTCCCGAGCCCCCCGCCCCTCCGAGCCCCACATGTAAAACGAACGTTGTACACTGGTGAGCATGGCTGGTACGCGAGCAGAGATCGTCTCCTCCGCTGAGCAGGTCTTCGACCGTCACGGCTTCGCCGGGACGGGGATGGACCGGCTGTGCGAGGCGGCGAGTGTGTCGACCCGGACGCTGTACAAGCACGTCGGCAGCAAGACCGGGCTGATGGCAGCGGTGCTGGAGTCGCGGATGTCGAGGTTCTTCGAGCGGTTCGACGTGCACAGCATCGAGGAGCTGTTCGAGGCTCTGGAGACCTGGGTCGCCGCCGAGGGAGCCAGAGGCTGCCTGTTCCTGCGCGCTCAGGGCGAGACCGGCGGGCTGACCCCGGAAGTCTCGGCGGTCGTCGCCGAGTATC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGTGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3083869-3083048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3083868 29 93.1 33 ...A........................A CGTTCGGTACCGAGCAGGACCCGGTCACCGGTC 3083806 29 96.6 32 ...A......................... CCGTTCACGGCCGTGCGGCGGCCGGTGATCGA 3083745 29 100.0 32 ............................. TCCAGCTGGCGGTTGCGGTCGCGCGTCGTCAT 3083684 29 100.0 32 ............................. GGGAGGCGAACTGACATGCCCGAGCGCACGCT 3083623 29 100.0 32 ............................. ATGTCGTTGGTGGCCTGCTGGCGGCGGTCGCG 3083562 29 100.0 32 ............................. GGCGGCAGTGTGATCATCGCGGCTTCCTTGTG 3083501 29 100.0 32 ............................. GCGACCCAATTCCCGGTGCTGTTCCGGGAGAT 3083440 29 100.0 32 ............................. GTCGTGCTGACCTGCGGCAAGACGCTCCTGGA 3083379 29 93.1 32 ...C..........C.............. CCGGCTCGGGCGCGATGCAGGACTGCGAGGTG 3083318 29 93.1 31 ...C.....................C... CCGTCTACGCCGGGTGGCAAATCACCGGACG 3083258 29 93.1 32 ...C.....................C... CACGACCGCCGCCGCACTCGGACATGCCGCTG 3083197 27 89.7 32 .............--.............T CGGCGTCTCGCGGCCGCACGACTGGCTGGTCT 3083138 29 93.1 32 ..............C..........C... TTCGGGCATTCCCGCACGGCGGAAATTTTCGA 3083077 29 86.2 0 ..............C......G..AA... | G [3083073] ========== ====== ====== ====== ============================= ================================= ================== 14 29 95.6 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGCCTGCCCTTGCACCGCTTCCCCCTGGAGCGCACCGCCGACGCCCACACAACACTCGAACAGGGCGTCACAGGAAAGGTCCTGCTCGACGTCGTCTGACACCCGACCCTTCCCTCCCCATCACCTGACGTCCGGCCCACCCCTCCACACATCTCCCAAGCACTACCGTCAACGCCCGCCCGGCCTCTGTCACTTGTCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACGAGCCGGTCCGGCAGCGGTGGAACGAGGCGGCGCACGACGGAAACCGGGAGGGCAATGATGAGCCACGCTGGGCGTGTTCGCCCGACATCGCCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCGTGCACCGCTGAGAAGAAACCCCTGGTCGGCTCCT # Right flank : TATTCTCTTCACGGCGCTGTCAGCGCAATATCGATCTCGACTGACGCGGGAATACCCTTGCACGCCACGTACGCCTGCGGCGTAATTCAGTCTCCCCCCGCGTACGAGGGGCAGGGACACAGCCAGACACTGCGGCGAACATCCTGGCGCAAGAACGGTGAAACCAAGGACGTGTAGAGGTAGATAAACAAAGGACGTGTTTCCAGAACTCACCCTGGAATCAGAGGGTTTCCAAAAACAGCCCCCTCCGGGTCCACGTCCCAGTACGCTCATCTCCCGGCTCATCCCGAGCCACGAGACGCGAGGCCGCAAACATGGCGGAGGCCGGACTCTCTCCCCAGCTCGTCGGGGCAACGACGTGCTGGGAGTCCGGCCTCCCGTCTCCGTGAGTACCGACACCCAAGAGACTCGAAGGAGAGTCTACTAGTGAGTTCGTTATCAGCCCCTCTCCAGCCGGATACGACCCCGCTCTGGACGCTGATCAGCGCCATGATCAGCGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6675907-6675144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6675906 30 100.0 31 .............................. CTGTGGTATCCCCTTTTTCTTCTGCGTGCAT 6675845 30 96.7 31 .............................G GTCATTGAGGCATGCGTCTGGATCGGGCTGG 6675784 30 100.0 31 .............................. TCGGCTCAATGGGGGTCATCGCCTCATCGCC 6675723 30 100.0 31 .............................. GGCGGCTCGCAAGATCAACGAACGGCTCGAT 6675662 30 96.7 31 .............................C GGCGTCAGGGAACACCCCTGAGAGAGTGCGG 6675601 30 96.7 31 .............................C GCGATCTGGAGGACGCCGGCCAGGACTGGCC 6675540 30 96.7 31 .............................G GCCACGCGCCGCCAGCCCAGCGGGCCAGCAC 6675479 30 96.7 31 .............................C AGACCATTCCGTACAAGTACCAGATCCGGGA 6675418 30 96.7 31 .............................G AGACGCATCGGGGACGCAGATGGTGCCGGGG 6675357 30 96.7 31 .............A................ GGGAGCTGTGGGTCCTGTCCGCGTCGGAGGA 6675296 30 96.7 31 .............A................ CGGTCTGCGTCGCGTCGGCGCCACGGCTGGT 6675235 30 90.0 31 .............AC..............C GCGACATGGAGGACGCCGGCCAGGACTGGCC 6675174 30 90.0 0 ........G.G............T...... | T [6675148] ========== ====== ====== ====== ============================== =============================== ================== 13 30 96.4 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCA # Left flank : CCGCTGCACCACCTGCGCCCACCTCTACTGGCCCGGCGCCCACCACCCCCACCTCACCACCACCATCGCCTCGGCCCACCAGACCCTGACCCACCGGGCCCTGACCCACCGGGCCAACTCGCCCTGAACCCCGGCTCCGTGTCCACTCCCCACCGGCTGTCGCCTGCGCCCTGCCGTACGCCGTTGCCGGTTCTTGAGCGGGGCGGCCGTGAGTGCAGGGGGCACCGCAGAACAGCCTGTTGTTCCCTGCGTGCACGGGTATGCCTCGGCCGGACCCGACGTGGTGCGGGTTGGGGCCGCCGCTGGGCGGGCGAACATGCGTTGGTGCCTTGTGGGAGGCTGGGAGCGCCCGGAGGGGCGGGCGTAACTGCGCCGAGCCTGCTCACACGGACTGTGTCGATGGTTGTTGCCTTTTATGTCCCGAGCTGGAGGAAATGCCCGAACTCTCGAAAGTTGCTCAGAACGGCCGTCGCGCCGGGTAAAACCGCAGGTCGCCGAGC # Right flank : TTCGGCGGTGACGGCGCGGTGTACGGCGCCCACCGATCAGTCAACGGGCGTGTTCGCGGCGGCACTTGGGGCAGCGGCACGGTGGCCAGGCCGCGCTCGCTACGGGTCCTCGGGCCGGCCGTACGACGCGTCGTGGTGTCCAGGTGCGCCCGCCGTCGCGGGAGACGCGGAGGGTCATCCAGCTCACGGCTGATCTCCCAACGGTCGTGGTCCCGGAACTGCGGCTGCCGGCTCGCTCTTCCTCGTGTACTCGTAGTCGAAATGGTGTGGTGTGCAGGCCAGTTGAGATCCGCTAGACGGCACCGGCTCTCGCGGCTGATCGGGTTCCGGAATGAGCTGCCGTGCGTGTTGCCGCTTATCGACCATGGGTGTCCTCCCGGTGACGGATGGTGCGGTCACTCAACCCCGGGGCATCCTGGAGGGGCCACGAACCACCCGCGGACTGCATACGACGATGCGCGCAGCGCTTAGTGGTGCCGCATTCCGGACCCGTACCGCGT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 8207963-8207508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029241.1 Streptomyces sp. NHF165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8207962 29 96.6 32 ......T...................... GTCTACGAGAACGGCTACCTGGTGCCCATCCG 8207901 29 100.0 32 ............................. CGGTTCGACGTCCGCGACGGCGAGATCGTGAC 8207840 29 96.6 32 ............................G GTGTGCTTGACGGTGGGGGTCCACGAGCCGGG 8207779 29 96.6 32 ............................G GTGTGCTTGACGGTGGGGGTCCACGAGCCGGG 8207718 29 100.0 32 ............................. ACGTCAGGGTCGTCGGCGCCGCGGCATGCGGC 8207657 29 93.1 32 ..............C.........C.... AAGGTCGCAGGTGCATTCGGTGCCCCCAAGCT 8207596 29 93.1 32 ..............C.............G TGCGGGGCCAGGTGGCGCCGATGATCCGGCTC 8207535 28 72.4 0 .........A..T.C......-...GGTA | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGCTCCCCGCACGTGCGGGGATGGTCCC # Left flank : CGTTGCCCGAGCCGCTGCCCACCATCCGGATCCGTCGAGCCATGCTCTCTCCCTCCCCAGGAGTCGCCGGTCAGCCTCGCACCGTAGCCGACCGCAGGCGATCCGTGCTGCCCTTCCGGTAAAGGGGTTGTGCTCGCGGAAGCAGACGCGTCGGCGTCCGTTCGGACCGCGTTGAGATGCTGGCCCCGCAGCTCCGGGCCACGGTGGGCATATGGCCGCATCGGCACCGATCATCGTCTACCCGCCCGACGAGGACGGCGGCCGGCGCGTGCGCGCGAACGGCACCATCCTGGGCCGGGCGTACAACGTCAACGATCTGCTGGAGTTCCTGCGCCGCGCCGGACTCGACCCGGACGAAGTCGACCTGGATGGGGCCCTCATCCAGTGGCGCGGCGGCGGCCCCGACCAGTGGCCCCCTGGTGGCGCTGCCTGAAAGGTCCGAATCTCGGGAAGTTGTTAAAATCAGGTCCCGGTCAGCAGAAAGTTGCTGGTCAGCAAGT # Right flank : GACACGATGAAAGCGCCCCCGCTCGGCCGTGGCCGAGCGGGGGCGTGGTGTCAGTATGGCCAGCGTCAGTTCACCATCGGGACATCGACCGTGGAGTCCGGGCACTGCTCGGCTCGCTCTCGAAGTGCCGCCAGCTCGGAGTCGTCAACCGAGAGCCCCCACCGGGTCTTCACCCCGATCCAGTCAGTCAGGTACTGGCAGGAAGCTGACGCAGCCGGCACCCACCATGTGCTCGGGTCCTGATCCGATTTCTGGCGATTCGACCGCGCCGAGACGGCGACCAGGGACCGGCTCCAGCCCAAGTCGTTCGCGTACGCCTGGCGGCGCTTTGCGGACCACTGAGAGGCGCCGCTGTCCCACGCCTCCGCCAGAGGCACCAGGTGATCGATATCCAGGCCGCGAGCGGACGTGGTATCGACCTCGTCGTAGTAGCTGTGCCACTTTCCGCCCGTGAGTCGGCAGCGGGGGCCGACCGTCGGCGCCTCCGTCGCCTCCTCGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //