Array 1 520260-516841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATWB010000001.1 Rhodocyclus tenuis strain DSM 112 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 520259 37 100.0 35 ..................................... CAGTCGTCCAGGTTCGGCGTCGATCCGAACTCGAT 520187 37 100.0 35 ..................................... TTCGAGTATTCGAAGGCTTGACCGTGGCCGCCTAC 520115 37 100.0 35 ..................................... TGAAAGCGATTTAACGATATACAACATTCGCAACG 520043 37 100.0 35 ..................................... GACGGGTAACAAGGACAACACCACCGGGACGACAT 519971 37 100.0 35 ..................................... AATATCGATCGTATCTTGCGAGGACGCTTGCAGAC 519899 37 100.0 35 ..................................... CTTGTCGTGCAGCTCATCAATGCCGCTGCAATTGG 519827 37 100.0 35 ..................................... CTCGCCGGGCCGCAACTCACCGCCAAGGCCGGCGG 519755 37 100.0 34 ..................................... CAGCCGGGCGGCGTCGTTATATTGCCAAAGCAGC 519684 37 100.0 34 ..................................... GGCATTTCGGTGCGCGACTGGATCAGCAAGACGT 519613 37 100.0 34 ..................................... CAGCGTTCAAACGTCGGCTTTGCTTGCTCCGTGT 519542 37 100.0 36 ..................................... TCTGACGGCAATGGATTGGGAACTCCCGCCGAGTCA 519469 37 100.0 34 ..................................... ACCATGTCTAGCGCGGCCATATCAGTCTTTCATG 519398 37 100.0 35 ..................................... GCGCTTGAGCGACCGGCAGCACCAACAGGTACGGT 519326 37 100.0 35 ..................................... ACGGCCTCGCCATCCGCATGGGGGCGCAGACCGGC 519254 37 100.0 34 ..................................... TTAGTGCTGGTGCAAATACCACACAAACAATTAA 519183 37 100.0 34 ..................................... TGCTGCCCGCGTGTCCATGTGACAATGACCGCTG 519112 37 100.0 36 ..................................... TTGAATTTTGCGGGCTTGTCATCGCGGGCGCAAAAA 519039 37 100.0 33 ..................................... TAAGTTGTCCCGGTCTTCGCTTGACCGTGACGC 518969 37 100.0 35 ..................................... TTTTCGGTATCTTTTGCCACGCCAACCGCCCGCCG 518897 37 100.0 34 ..................................... ACGCGCAGTTCCCAAGTTCTGCCCGGTTGACGGA 518826 37 100.0 34 ..................................... ACGCGCAGTTCCCAAGTTCTGCCCGGTTGACGGA 518755 37 100.0 36 ..................................... GCCCGCTTGTGCGACGAGAAGAGCGATTTTACCGTC 518682 37 100.0 34 ..................................... GCAATGTCGGGATTGACGCCCGACTTATTAAGAT 518611 37 100.0 35 ..................................... ATTCCTAGTCAAGCGCATCATGCCCGCCGAACAGG 518539 37 100.0 34 ..................................... AAAAACCCGACAAACCAATAAACCAAACCACATT 518468 37 100.0 34 ..................................... AAAAACCCGACAAACCAATAAACCAAAACCACAT 518397 37 100.0 34 ..................................... CGGGCGGCGCGCGGCAAGGGGTTGCCGGACTGGT 518326 37 100.0 34 ..................................... ATGGCTGCTCGTCATCCAGCCCGTTGAACCCGGC 518255 37 100.0 33 ..................................... AGGTATTGCCCGCTGCCCGTTAGCGTAAATAAG 518185 37 100.0 34 ..................................... GATGGTTCGCGCAGAACGGTGACGGCTACGCATC 518114 37 100.0 39 ..................................... AAAAAAGATGCAAAAACGATTGCAACGTCAGTCAGTCGT 518038 37 100.0 35 ..................................... ATTGCCCGCCGGACGGCGCGGTTCGTGTCGCCGTG 517966 37 100.0 35 ..................................... TACATCTGGCGGAAGCGGTGAGATTCGAACTCACG 517894 37 100.0 34 ..................................... GGATTGATGCGGATCCAGTCGCCCGTAATCAGGT 517823 37 100.0 36 ..................................... CCACTGGGGAGGGGCGCGGGTATGATCGGCCGCCGA 517750 37 100.0 37 ..................................... GCTGCCCTTGCCCGTCGCGCAGAATGCGAGACCTTCC 517676 37 100.0 33 ..................................... CGGTGAGGTGATGTTTGCGCACGAAGCCGAGGG 517606 37 100.0 37 ..................................... TGGAAGTCTGGCGCAGCGCCTCGCCCCCGCCGCCGGT 517532 37 100.0 37 ..................................... CCCTTGTCTTCAGCGCTTGCAGCAGGATGTCCTGCAC 517458 37 100.0 35 ..................................... CGCTTGACGATCATCGCCGACGCGTGATGCACCGA 517386 37 100.0 35 ..................................... ATGAAGCGCATGAGCTTCGCCGGGTCGTCCTGCGC 517314 37 100.0 37 ..................................... CATCGCTATGGCGATCTTTCGGAGTTGGCCGGCGGTG 517240 37 100.0 36 ..................................... ATCGTTCCCCCCTACACCGTTTCAACGTCGCGGCCA 517167 37 100.0 34 ..................................... TTTTGTCCGGTTGGTCGTTCCTTGCGCCAATTTG 517096 37 100.0 36 ..................................... CACAACGAGGACATACTTGGCGACGACCGCGACGCC 517023 37 100.0 35 ..................................... AGTATGTCACCGGGCACTCAATCATTTCTCCCGGC 516951 37 100.0 37 ..................................... GGTTTCTTGCGCCTGAGCGCGGTCGATGTCATCCACG 516877 37 70.3 0 .............C...ACAA....A.C.CG....TG | ========== ====== ====== ====== ===================================== ======================================= ================== 48 37 99.4 35 GCATCGCCTCCCGGCAACGGGAGGCGTGGATTGAAAC # Left flank : ATACCTGCCTTTTCTGGTGCGCTGAGCATGCTGGTCATCGTCTGCTACGACGTCAACACCGAAACCCGCGAAGGTCGCCGACGCCTGCGGCGCGTTTCCAAATTGTGCGAAAGCGTCGGCCAGCGCGTGCAGAAGTCGGTCTTTGAATGCCAGGTCGACCGCGCCCACTTTGAAGCGCTGGAACGCGATCTGGTCGCGGAAATCAAGGAGGGGGAAGACAACCTGCGCTTCTACCGCATCGCCGAGCTGAAAGGTTACGAAGTTCGCGAACACGGTTGTTTCCGTGCCACCGACTTCGACGCTCCGCTCGTGCTCTGACTTTGCGCGAACCCCCAGTGACCATGCTTTTGCCGGGCGATCCGCGCAACGCGCATGCGCATGATTTAAGGCGTCTTTCCGCCGGTGATGACCGTCGCGTAAGATGCTTTCTGCTCAGGAACGAAGCGGTCCGCGCAATACGGACGTTTTGTTCTTACGCTTCCGGTAGTTGCGGGGCATGA # Right flank : CCATTAGCAGAATCTGAACGGGGCGAGTAGCTGCTGCTGGGGCCTGTATCTCGCTACAGCGAATGGCGTGCGAGTAGTTCAGCAAACAGGGAGGATGCGCAGTGCTTAGATGTGAGGCATTCCTCTCATCTTTTGATACGAGATCAAGAACAGTTCATTTCTATCGAATGATCTCTTTACTGCCGTCAGTCGGGTGTTCTGCGCTAGGAAGGGCAAGTGGCATTCACACCACGTTATTTTATGCGTGAGTGTCACGTTGAGTGACACTTACTACGACTACGGCAGAAATGCAAAGAGGCCAATCCGAAGATTGGCCTCTTTTCGATTTCTTTGGTCGGGGCGGCGGGATTCGAACTCGCGACCCCTTGCACCCCATTTATCCGCACTTGCCTACTCTTAACCCCCGGCGAGTTAAAAATATTCCCCTCGATTGCGTGCCTTCCTTTGTGGATCAAGCGATAATTCGACTTGTAGTAGCTTAACGGAAGTTAAACGTACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCTCCCGGCAACGGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //