Array 1 731983-731348 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPN01000001.1 Stieleria varia strain Pla52n Pla52n_contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 731982 35 100.0 38 ................................... TCTTCGTCGACGACGACTACGAGACAGCATAAAGCTGA 731909 35 100.0 42 ................................... TGCGGCTCTTCCGCGTTGACAGCCGAGACGACGAGAGACAGG 731832 35 100.0 41 ................................... CTTTCGCATACCCTTTGTATCGCCCACGGCTGAAGTGATAT 731756 35 100.0 38 ................................... ACCCCTCACATTCTTGGTCCATCTAAGCCGCTTCGGCG 731683 35 100.0 40 ................................... TTTTACCGTATTCCGCATTGCGTTCGAGCAACTGCGGGGT 731608 35 100.0 40 ................................... GATGATCTTGTAGACTTCCCCAAATCGCGAATCGTCTTGA 731533 35 100.0 36 ................................... TTTGGCTTGAGTTCCGTACCCAAGGCTTCCATAACC 731462 35 97.1 45 ..................................G CTTCACCGGTGTATGTCAGGCTAGAAAGCCTGACGTACTTGTTGG 731382 35 88.6 0 A...........A...T.A................ | ========== ====== ====== ====== =================================== ============================================= ================== 9 35 98.4 40 GTCGCAAAATGAGGGTCAGCTGACTCGATTGAAAC # Left flank : GAAGCTATCTCCAAATCGCATTGCGGTTGATGCACAGGGTGCGTCCGATTGATGGTACCGCAAGGCTAAACTGTTAAAAGATTGGTGTTGTTGCATTATCGGATTGCGTAGCAATTGCACGATGCTTCCGCAGGGCTTGTCCCGGGTCGGAGCAACAACTCGTAGCTACGTCGTTCATCTCAGCCCTGAAAGGGCGCTACATGCTGTCGGTGGAAATCGAAGTTGCCAGGCAGGTCGGCACTACGGATGCGAGGATCATTGAGAGCGTCAGCAGCCCCGGATGTGGGCGCGTCGTGAGAGGTTCGATGCTTGTCCCGGACTTGCGACAGCGGTCAAAGTGTGACTGCGGTAAGGAAACGACAAACCGTTTGCCACCGGCAGTGTCAGACTGGGTGGCGCTGCGGATGTTCGTATTTCTAGGATTTTGAGATGAATCAACGTAAAAGCTTGCCGCCGCGATACTTAGCCGTTACGATTCGAAAGCGGCCCAAGAAACCGCG # Right flank : GGAGGCCCCGTTTGTTTTTCTTCGCGTGAGGATCAGGCTGGACTCAGCAAAAAGTTGGGGGCGTCGCGTGATTCAGGTTCGCAAGGCTTGTTCCGCGAAGCTCCTTCCGCCGAGCTTGTCTCGGCGGAGGTTTTAATTGAGGGCTACCGTGGGCTGTTCAAAATTTGGTGTTGAAACTGTTTTTTCAGTCCATGTTTTTGTTCCATGCATCGCAATCAGTGTGAGCCTCAGGCGCTAGCCGTGGGCCAGTACCACAATCCGCCTCAGGCCCACGGCTAGCGCCTGAGGCTCACTGGGGGCCACCAGCTGCGCCGGGATTGGTGACAGAAACTTGCGGAGCGCCATAGTGCCACGACGCCAAATTCTGAACAGCCCACGGCTACCCTCGCACGCTAACAGAAATTCCCCACCGCCCGAGAATCGCCAGAGGCGATTCTCGGGCGGTGGGGAGGTGATTTGCTGTATTGACGGTAGCTGCCAGTTGTTGCTCCGAACCGGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAATGAGGGTCAGCTGACTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 735840-734978 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPN01000001.1 Stieleria varia strain Pla52n Pla52n_contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================== ================== 735839 31 100.0 42 ............................... AAAGTCAAGTACTCCTGATATCTTGGGTGCCCCTTATAGTCG 735766 31 100.0 43 ............................... TGCGCTTAGGACAAAATCTATAATTTCGCCCTTCATGTTGTCG 735692 31 100.0 44 ............................... ATAACCACATCCATGCTGATGACTTGAACCTTCCCGTGTTGTCG 735617 31 100.0 41 ............................... ATTCGGACGATGTCATTGCGTTCGGTCATGATACTACGTCG 735545 31 100.0 45 ............................... TCGGGGGTAAAGGAAACAGCGGTTTTCACCTTGTCTACTTTGTCA 735469 31 100.0 42 ............................... TCTGATCCGCTTCGGTGATTTCTTCAGTCACCGTTTTAGTCA 735396 31 93.5 49 ...................T.........G. TTTCACCGATGCAAGTCAGGCTAGAAAGCCTGACGTACGTATCGGGTCG 735316 31 87.1 42 .......G.C..TG................. TTGCCGATGACACCTTTGACTTTCATCGCAGGAGCGTTGTCG 735243 31 96.8 49 .............G................. CCTTGGCACACGATGCCGGCGATCTTTTCATCGACGATGACATCGGTCG 735163 31 100.0 44 ............................... CCTTCTCGTTGCATTTGAACGATTTCGGCTCGGCTGAACCGTCG 735088 31 83.9 50 ..G..................T..G...C.G CTTCACCGGGTGTGTGTCAGGCTAGAAAGCCTGACGTACTTGTTGGGTCA 735007 30 87.1 0 A.....A...-.................G.. | ========== ====== ====== ====== =============================== ================================================== ================== 12 31 95.7 45 CAAAATGAGGGTCAGCTGACTCGATTGAAAC # Left flank : TCGTTGTCATTCTCTGGGATCGTTCCCCAAGTTCAGCATGCCACCTCTTCCTCGACTTGTTGGGGGAGAAGTCGGACGAGGCGTTCAGCCTTCGTCCGGTTGAGGGGGCGATACGCGTCGGAATTGTGCGCAAACGCTGCTCTCACCCGAGAGATGCCGCAAGGGATTACTCGTTCTCGTCCAAATTCCTCGGTGAAAGCGCCGTGCAAGTTGAACGCGCCCTGTTTTGGCTGAGAGTGTGCCTGAGCCAGATAGCTCGCGAGACAGCAGCTCCGGATGTGGGCGCGTCGTGAGAGGTTCGATGCTTGTCCCGGACTTGCGACAGCGGTCAGAGTTTGATCGCGGTAAGGAAACGACAAGCCGTTTGCCACCGGCAGTGTCAGGCTGGGCGGCGCTGCGGATGTTCGTATTTTCAGATTTCTGAGATGAATCAACGTAAAAGCTTGCCGCCGCGATACTTAGCCGTTACGATTCGAAAGTGGCCCAAGAAACCGCGGTCG # Right flank : GGAGGCCCCGTTTGTTTTTCTTCGCATGAGGTATCGGGCTGGGCTTGCAAAAAGTTGGGGGCGTGACGTGATTGAGGTTCGCAAGGCTTGTTCCGCGAAGCTCCCTCCGTCGAGCTTGTCTCGGCGGAGGTAACAACTGACGGCTACCCTCGCACGCTATCGGAAATTCCCCATCGCCCGAGAATCGCCGAAGGCGATTCTCGGGCGATGGGGAGGTGATGTGCTGTATTGACGGTAGCTGCCAGTTGTTGCTCCGAACCGGGGCAAGCCCGGCGGAAGCAGTGAATAGATCTTGCGTAAACCGAGAATGCCACAAACTCATACCGTTGATAGTTCAGGATAGCGCGAGTCGCAAAATGAGGGGCAGCTGACTTGAGTGAAAGCTTTAGCGGTGCATGTCAGGCTAGAAAGCCTGACGTACTTGTTGGGTCGCAAAATGAGGGGCAGCTGACGTGAGTGAAAGCTTTAGCAGTGCATGTCAGGCTAGAAAGCCTGACGTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAATGAGGGTCAGCTGACTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //