Array 1 20685-22213 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEI01000012.1 Pseudomonas aeruginosa strain VET-125 PA4_A5_NODE_28_length_67911_cov_39.4473_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20685 28 100.0 32 ............................ TTTTCCTGGCGAACGATGGCGCACTGGATTGC 20745 28 100.0 32 ............................ AACAAGCACGCCGATCGGGATCAGCATAAGCA 20805 28 100.0 32 ............................ TCCAAACCGGCCAATGGTCCGTTGGGGCAGTT 20865 28 100.0 32 ............................ GGCACAGCTTCGCGGCGGCGCGGCGGAATCGG 20925 28 100.0 32 ............................ AACAGGCCGTCGGTGAAGCCGCCGACCTCCAC 20985 28 100.0 32 ............................ AGTATCTGCCGGAATGTCCAGCAGCGTGCGCC 21045 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 21105 28 100.0 32 ............................ AGGTGCTCATCATCGAGCACGCGGGAAATGTC 21165 28 100.0 32 ............................ ATCCCCACCGTCTCCACCATCGCCCGGATCAG 21225 28 100.0 32 ............................ TGGGCATCAAGGTCGAGCGCAACCTCGAACAA 21285 28 100.0 32 ............................ TTCGTCTGCGCCCTGGTGGTCATTCCTCTCAG 21345 28 100.0 32 ............................ AGAAGCCGTAACCGGCAGCAGCGCGGGCTTCG 21405 28 100.0 32 ............................ AGCAGCCTGGACCTGGTTCGGCCCGTCCAGGC 21465 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 21525 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 21585 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 21645 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 21705 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 21765 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 21825 28 100.0 32 ............................ AACAGCGCGGGAGTGGCGCGCTCGATCGGCAA 21885 28 100.0 33 ............................ AGGGACGTCGCGGGCCAGACCTACGAACTGTTT 21946 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 22006 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 22066 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 22126 28 96.4 32 ...........A................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 22186 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31546-30738 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEI01000012.1 Pseudomonas aeruginosa strain VET-125 PA4_A5_NODE_28_length_67911_cov_39.4473_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31545 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGATGAACC 31485 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 31425 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 31365 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 31305 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 31245 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 31185 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 31125 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 31065 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 31005 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 30945 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 30885 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 30825 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 30765 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43213-44706 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEI01000022.1 Pseudomonas aeruginosa strain VET-125 PA4_A5_NODE_26_length_76200_cov_49.1676_ID_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43213 30 90.0 35 GT...G........................ GAGATCGAGTCGGACAAGGCCGAGCGCTGGGAAGT 43278 30 100.0 37 .............................. ACCAGTTGCCTAGCCGTCATCACGGGTTTGCTGATGT 43345 30 100.0 36 .............................. GAAATCTGGCGCGTCGAGTGGCAGCAAATCGTGCGT 43411 30 100.0 37 .............................. CAAATATTTGAGCCTGGACAGAATGTAAGTGGACAGT 43478 30 100.0 37 .............................. AGCCAGAACCTGGTGCGCTGCCGCGCCGTGAATATGT 43545 30 100.0 37 .............................. CGCATGCCGCGCTGCGAGAAAGGCATCGAAGTTGAGT 43612 30 100.0 36 .............................. CTGATGATTTGCTGGAGATGTAGCCATGGGCCAAGT 43678 30 100.0 35 .............................. GCCAGTGCCCAGCATGTCCAGCTTGGCGGCCTCGT 43743 30 100.0 36 .............................. ACCAGAAGGGCGCCGCCATCGCTCAGGCGATCCAGT 43809 30 100.0 37 .............................. ACCGGTATCGCGCCGCGCTTCAACACCGTCAGCACGT 43876 30 100.0 35 .............................. AACGTCGCTGGGGCCACTGTCCAGTACCTGCCCGT 43941 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 44008 30 100.0 38 .............................. AGCACGGTCTGGTCCATGTACCAGTCGAAGCCGAGGGT 44076 30 100.0 37 .............................. ATGGCTTTCTCCGGGCAAAAGAAAAGGCCCTATTGGT 44143 30 96.7 38 ........A..................... CATCAGATCAAGGCAGCACTGGTTGAGAAACCCCACGT 44211 30 100.0 35 .............................. TGGAAGTCCCCGACTATCCGGAAGATGCCGAAGGT 44276 30 100.0 38 .............................. GGCGCGACGGTCGTCAGGATGAGCGACGGTGCTGGCGT 44344 30 100.0 38 .............................. TTCTTGAGGGTGGAGAGGCGGGCTACTTTTGCCGGTGT 44412 30 100.0 38 .............................. ACGGGTGCGCCAGTGGAAAGGGAAATCACATGGAAGGT 44480 30 96.7 34 ...........T.................. CATTGCTCCGAGAGCACGTTCGTGCCTGGCATGT 44544 30 96.7 38 .......T...................... AGCCCTGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 44612 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 44677 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : GCCATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTATGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATATACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCG # Right flank : GATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //