Array 1 550-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000026.1 Legionella pneumophila strain D5698 D5698_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 549 32 100.0 33 ................................ ATTAAAAAGCTGTCAACTGGAAATTGATATTTT 484 32 100.0 35 ................................ TAAGCCTAAATTAATCGTAAAATTGTTACAAGAAA 417 32 100.0 33 ................................ TATATAAAAATATGGTGTGTCTTGCACTTGGCC 352 32 100.0 35 ................................ ATTATACGGACCTAATAATACAGTTGCACCAGCAC 285 32 100.0 34 ................................ CAGTTCGTATGGTAGCGGGGGACGCCCTAGACGC 219 32 100.0 34 ................................ ATTTAAACGATGATGAGTTATTGCTTTTAGACTT 153 32 100.0 35 ................................ AAAGCTCGAAGCAATCAGTTAAACATTGACATCAA 86 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GCGGGCGCGTGGATTGAAACTCTATTGTAAGAAAATACTAACAAATGCCTGTT # Right flank : CAATTTATCTTTTATTGCGTAAGTGTTACCTAAGACTGTCGCGCCCCGCGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51-1520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000029.1 Legionella pneumophila strain D5698 D5698_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 ............................ GAACAGCTGGTATAATTTTTATAAACCTAGAT 111 28 100.0 32 ............................ TATCCAGTTTGTGATTCGTGGTGTTCCTTCGT 171 28 100.0 32 ............................ TCAAAAAGGTCCTGCTGTTGAGTTGCCTTTGG 231 28 100.0 32 ............................ CGCCGCCTAAAGGGTCAATAAAACCAACATCT 291 28 100.0 32 ............................ ATACAGATAAAAGTGATGCTAAAGTTCACGGC 351 28 100.0 33 ............................ TGTAGGATTCGGCTCTAATTCAATTAAACTATG 412 28 100.0 32 ............................ CAAGTACCTTTTGATGCCTGAAATACGGAGTG 472 28 100.0 32 ............................ TATTTGATGAGCTTCTTCAAATTCTGGATATT 532 28 100.0 33 ............................ TTTGTGCTTAGCTTCTAATTCATTTCTTATACT 593 28 100.0 32 ............................ TTGGATATCTTGCTCGCTTTGATTATGTACAT 653 28 100.0 32 ............................ GGCAAGGTCTTTAATGCCTTTGCCTTTGCTGA 713 28 100.0 32 ............................ TTGTGGTCAGTGTATTGGTTGTAAGTTACGCA 773 28 100.0 32 ............................ TCCTATTGATCGTATTAAAGCTCTTGGTGATG 833 28 100.0 32 ............................ TCATCCAAGTCAACGACTAATATGGGTAAGCC 893 28 96.4 32 ........T................... CTACAATGGCCTGCGATAATTGTTCCTGCCGA 953 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAGGCAAACAGAGACA 1013 28 100.0 32 ............................ TATTGGTGTAACTTTAAACACCATATCAGAAT 1073 28 100.0 32 ............................ TAAGAAAATATAAAATAGCTGGCTGTGTAACG 1133 28 100.0 32 ............................ TTGGTATAGACGAAAGTAGCTGGCGATATCAT 1193 28 100.0 32 ............................ AATTCATCATTAAATAAAACAGTTGGCTCTTG 1253 28 100.0 32 ............................ AACTCACGCCCAACAATATCAGCAGCTTTATA 1313 28 100.0 32 ............................ ATCGTCACCGGACCTAAAATACCATCCACTGC 1373 28 100.0 32 ............................ GTGGGGAGTTAATCTAATGAAACTATTACCCT 1433 28 100.0 32 ............................ TCAACTATTTGTTCAATCGGCTTAGGCTTGTC 1493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAAAGATACACAGGTCGGCGGCATTCAAAGCGATG # Right flank : ATAGAGACAAGAAACTTCAATCATTGCTTTATGTTCACTGCCGTACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 499-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000031.1 Legionella pneumophila strain D5698 D5698_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 498 28 100.0 32 ............................ TTGAGTCATGATGTATGATTTATGATGAATAA 438 28 100.0 32 ............................ AGAAGCAAAAAACAACACGGCCTTGAGTATCT 378 28 100.0 32 ............................ AAAGTGTACGGAGATAGACCGCAAGACGACAC 318 28 100.0 32 ............................ AGTAGTGCTGGTCAAGCTCGTCATATGTTAAG 258 28 100.0 32 ............................ CATACATCTGGCCTGTATAATAATTATTGCTC 198 28 100.0 32 ............................ CAGAAAGCCCGATAATTGCGTTTAAAGCATCG 138 28 100.0 32 ............................ TTGTTTCCATTTCCTAAATGTACATTCTCCTT 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAGGCAGCTTAGAAATTGCACGCTGGACACCTAATCATTTCCATTT # Right flank : AAGTGTTCAATAAAAATGAACAAGTTAAACAAAGTTCACTGCCGTACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 148984-149136 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000009.1 Legionella pneumophila strain D5698 D5698_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 148984 32 100.0 36 ................................ TTTAGCTCTTGATTGTGACTATCCTCTGTTTGTCGG 149052 32 100.0 34 ................................ CAGTTGCTTGTAAAGTGCCTAGTCCAACGTCTGG 149118 19 59.4 0 ...................------------- | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 86.5 36 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GAATTTTATACTCCTTATTTAGTGAAATAATTATGTTTGTAGTAATAACTTACGATGTTAATGTAACAGCTTCTGGTGGGCAGAAACGTTTACGAAATATTGCAAAAACATGCCTTGATTATGGTTTAAGAGTACAAAATTCTGTTTTTGAATGCGAAGTTGAACCTGATCAATTTGTTTCATTAAAAAACACACTGTTGGATTTATTTGATCCTGATGCTGATAGCTTACGCTTTTATTTTTTAGGCAAAAAAGGGAAGGAAAAAATAGAACATTTTGGAGCCAATAGGGTCATTGATCCCTTGAGAGATCCGCTGATACTATAATTCGCTAACTTGAAGTTCTCATGTTTTTATCAGTCAATTATCGGATTATAACCAATTGATATTTATATTTCTTTTATATGCACTTATCAATCTAACCAATAAATATAATTTTTTATTATTATTAGCGATATTCAGTATTTTTTTCGATATATTTCAATATGCTATAATAATACT # Right flank : | # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000006.1 Legionella pneumophila strain D5698 D5698_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53 32 100.0 35 ................................ TTTAGGAGACTGTATTGCTCCTGGAGACGGATATA 120 32 100.0 36 ................................ AGCTTTTGTATGTGCGCTGAATAAAGCGAAAACAGC 188 32 100.0 35 ................................ TGCCACTGGATTACCAGCAATTGGAACAGGAGAGG 255 31 90.6 0 ...A........-.......T........... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 97.7 36 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GGGCGCGTGGATTGAAACTAAATTCTACATTTTGTAAATAAGTTTCTAAAATG # Right flank : CATGGGTAGTATAAGTTTTTTAAGTGAGCAAAAGCGTCATGTCCTGCATGGATGGTATTGTTAAGTTTTAATAAAAATGGACTTGACGTGAACTGTTATAAACATTTCATATCGATTTTGGGTATATTTAGCTAGAAGCTCTTTGTCTTTGTCTTTGACTTTGTTATCTTAAATAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCCAAGACTATCTTGAGATTTTCCTGGCATTTTATTAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTTATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGAATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGCGTGATTCTTGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1217-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000010.1 Legionella pneumophila strain D5698 D5698_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1216 28 100.0 32 ............................ ATATTGGCGTTTTAAAATAAACCGTTACGTCC 1156 28 100.0 32 ............................ AAAACTGCCACCATCATTAAACTGTACTTGTG 1096 28 100.0 32 ............................ AATTGCCGGTAATCCTGTAGCAGATGTTAAAG 1036 28 100.0 32 ............................ AGGATATGCTGAATTTAAAGAAGACAGCGATA 976 28 100.0 32 ............................ TATAGCAGCAGCAACTACTCCGACAAATGGCT 916 28 100.0 32 ............................ CCTGATAATAGAACGCTTAATCAACATCGTTC 856 28 100.0 32 ............................ ATCAATTAATTAGCCTATTAGAATCGAAACCA 796 28 100.0 32 ............................ GCTAACCGTGGAAAAAGAACTGTCATCATCGA 736 28 100.0 32 ............................ TTTGAGAAAAACCCGCTGCCGCTTGTAGACGG 676 28 100.0 32 ............................ TAAGCAGGCTTTTTAGTTCTTTAATTGCGTCC 616 28 100.0 32 ............................ AGGAAATGCTTAACATGACCCTAAAAACGTCT 556 28 100.0 32 ............................ TTGCCATCGCCTTCCGATACGGGCAAGCGTGA 496 28 100.0 31 ............................ CACGCATTAAAACCCAACGCCGCATGAAAAA 437 28 100.0 32 ............................ AAGCGCGAAAGACCTAGGGTTACGGATGTTTT 377 28 100.0 32 ............................ ACCAAATATAAATGCTCAACGGTGCAAGATGT 317 28 100.0 32 ............................ CACTAAGTTAGGGGATTGCTGGTTACTTGGCG 257 28 100.0 32 ............................ GCGAAACTTCCAAAGAATTTGAAGACCTAGGG 197 28 100.0 32 ............................ CCGGTAAGCAATGCCGCCAATAGATACAGAAT 137 28 100.0 32 ............................ GATTTCAGGTGTTCCGGCATTGTTCGACACGA 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGATTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATCACA # Right flank : AATATACGGTAAAGACCAATATGGTAATGACGTGTTCACTGCCGTACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 104045-103713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAQ01000010.1 Legionella pneumophila strain D5698 D5698_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 104044 28 100.0 33 ............................ TTATACTGGACCTGATAAGCGTATTAAAAAAGA 103983 27 96.4 32 ................-........... TCTAATATTAGCTAGTATGTGGGCAATAACGT 103924 28 100.0 32 ............................ TTTGCACACTGGACATCTAATCATTTCCATTT 103864 28 100.0 36 ............................ GGTTGTAAAGACTGGTAAAAGAGCTATATATATATA 103800 28 100.0 32 ............................ AATGTGCCAAGTAACGTGCAGAATACAGTTAA 103740 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ==================================== ================== 6 28 98.8 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTACAGGCAGCTTAGAAATTCTCAAGTTGGTGCTCCTATGCAAACTGGT # Right flank : TTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCAGGCCTTGGTCCGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAATTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATAGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //