Array 1 1793803-1794988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010284.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1793803 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 1793864 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 1793925 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 1793986 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 1794047 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 1794108 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 1794169 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 1794230 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 1794291 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 1794352 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 1794413 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 1794474 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 1794535 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 1794596 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 1794657 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 1794718 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 1794779 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 1794840 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 1794901 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1794961 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1811658-1813273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010284.1 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1811658 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 1811719 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 1811780 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 1811841 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 1811902 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 1811963 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 1812024 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 1812085 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 1812146 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 1812207 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 1812268 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 1812329 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 1812390 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 1812451 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 1812512 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 1812573 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 1812634 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1812695 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 1812756 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 1812817 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 1812878 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 1812939 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 1813000 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 1813061 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 1813122 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 1813183 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1813244 29 100.0 0 ............................. | A [1813271] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //