Array 1 1313615-1315630 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044097.1 Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1313615 28 100.0 32 ............................ AGGTTCAGAACAGAGGCGTATCCACTCAGGGA 1313675 28 100.0 32 ............................ ACGTCATTTTGTTCAATCTCGATTTCCCTGAT 1313735 28 100.0 32 ............................ GGGTATTATTAATGTGCTTGAGAGAGTTCCTT 1313795 28 100.0 33 ............................ GCCGGGCGGCTGGCATTCATCAACCCGCTCACC 1313856 28 100.0 32 ............................ TGGAAGCCGCAGGCAAATTCCCAAAACGCTGG 1313916 28 100.0 33 ............................ CAATAGGCACGAGAACGGCGCACCATTCGATAT 1313977 28 100.0 32 ............................ TCTAATGTGTGGACACAATGTGGACATTCCAC 1314037 28 100.0 32 ............................ TTTGATGGTTTGCCCGCGCATATCAGGAATAA 1314097 28 100.0 32 ............................ AGTACGTAGGTTCGTCTGAGTGGATGCCGGAA 1314157 28 100.0 32 ............................ ACAGCCAGAAAATGGCATTTATGGAACGCTAT 1314217 28 100.0 32 ............................ AGTGACTGCCCACGGAAACAATCATAACTTGA 1314277 28 100.0 32 ............................ AGTTATCGCCCGACAGTTTGGCGCCAGCATCG 1314337 28 100.0 32 ............................ TGGTAATTAGCACGTAATGCATTAGCCGAAGC 1314397 28 100.0 33 ............................ AGGTACAGAGTAAGTCGGCATCGGCCGGGCACA 1314458 28 100.0 32 ............................ TTAAGGCGATACACGCAGCCGCCGATAGTTCC 1314518 28 100.0 32 ............................ TGTCCCGGGGCAGTGGATTGCGTGCAGTAAAG 1314578 28 100.0 32 ............................ CCACACCGAGCGGATTTTGCCAACAATGGCAG 1314638 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 1314698 28 100.0 34 ............................ CATCGAGTGTGGTCTGGCTGGTGTTCTCTTTGGG 1314760 28 100.0 34 ............................ ACGATGAAATTCTGTAGCACCGGGCTGACGCGAA 1314822 28 100.0 32 ............................ AACAGGCGTGGAGAACCACGGCGGCACTTTGC 1314882 28 100.0 32 ............................ CGTCAGAATCTGGCGGGGATCCGTCAGTAAAA 1314942 28 100.0 32 ............................ TCAAAAGTCAGATAACCTCTTTGCCTGATTTT 1315002 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 1315062 28 100.0 32 ............................ AGCAGAGGTGGCTCACATCGATATAGCCAGGT 1315122 28 100.0 32 ............................ AGATAAAATGCCCCGGCCACAGGAACCGGATC 1315182 28 100.0 32 ............................ AGCAGAGGTGGCTCACATCGATATAGCCAGGT 1315242 28 100.0 33 ............................ CACTGGGACACAGCCCCTTTGGAAACCTTCAGC 1315303 28 100.0 32 ............................ CAAACGGGAAAGTCGATAAAATTATCGAGCTT 1315363 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 1315423 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 1315483 28 100.0 32 ............................ AAGAATACGGCGCATCATCGGCGTGAAATCCG 1315543 28 100.0 32 ............................ CGACGCGGAAGATCATAAAATCGCGTGCCGCT 1315603 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================== ================== 34 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCTCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGACCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1326890-1327157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044097.1 Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1326890 28 100.0 32 ............................ GCAGTATAAATATCAGCGGGACATGATACAGC 1326950 28 100.0 32 ............................ ATAGCAGCGAGGCGCTCCAGTTCTCCGGCAGC 1327010 28 100.0 32 ............................ ATGCTCGCGTACTGGTTCGTGGCGATATCGCC 1327070 28 100.0 32 ............................ AAGTTGATCACCGTTGTTCGCCGTAGCGTTTC 1327130 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGTGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTGCTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //