Array 1 454319-455811 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHG01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H1 NODE_2_length_634611_cov_18.1299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454319 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454380 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454441 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454502 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454563 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454624 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454685 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454746 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454807 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454868 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454929 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454990 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455051 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455112 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455173 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455234 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455296 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455357 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455418 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455479 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455540 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455601 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455662 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455723 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455784 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471943-473907 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHG01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F70H1 NODE_2_length_634611_cov_18.1299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471943 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472004 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472065 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472126 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472187 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472248 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472309 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472371 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472432 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472493 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472554 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472615 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472676 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472737 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472798 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472859 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472920 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472981 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473042 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473103 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473164 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473226 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 473287 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [473329] 473329 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473390 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473451 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473512 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473573 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473634 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473695 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473756 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473817 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473878 29 96.6 0 A............................ | A [473904] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //