Array 1 173268-174821 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHR01000004.1 Escherichia coli strain EC_71 NODE_4_length_253417_cov_22.228148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173268 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 173329 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 173390 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 173451 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 173512 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 173573 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 173634 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 173695 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 173756 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 173817 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 173878 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 173939 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 174000 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 174061 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 174122 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 174183 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 174244 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 174305 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 174366 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 174427 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 174488 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 174549 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 174610 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 174671 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 174732 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 174793 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190323-191023 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHHR01000004.1 Escherichia coli strain EC_71 NODE_4_length_253417_cov_22.228148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190323 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 190384 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 190445 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 190506 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 190567 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 190628 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 190689 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 190750 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 190811 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 190873 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 190934 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 190995 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //